UFO08727.5prime Sequence
713 bp (503 high quality bases) assembled on 2011-08-05
> UFO08727.5prime
CAGTCGACATGAAAGCCTGGAGAGATCTGGGTATTACCTATATCCAGTAT
TCCAACATCGCAGCCCGTGTGGTGCGAGAGGCCCTGCGCATTGAGCTCCG
TGCAGACGCCGCCAAGCGAAACATCAGCCATGTGAAGTTCACTCCGTGGG
TGAACGGAAAGCCTGTGCCGCGCAAGAAGGTAGAACGTGAATCCGAATCT
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCTAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTTTTCTTAACATTTTGGCCAAATGGG
AGCCATCCCAAACGGCATGATGAACCTGAATCCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGCGAAGAGTT
GTCCATATTGGCCACGTTAATCAAACTGGTGAACCTCACCCAGGATGCCT
GAAACCGAAAACATATTCTCCATAACCTTTAGGAAATAGGCCAGTTTCCC
CGGTACCACCGCC
UFO08727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31477-RC | 424 | CG31477-RC | 130..321 | 9..200 | 960 | 100 | Plus |
| CG31477-RB | 490 | CG31477-RB | 196..387 | 9..200 | 960 | 100 | Plus |
| CG31477-RA | 482 | CG31477-RA | 196..387 | 9..200 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10122026..10122217 | 9..200 | 960 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS | 5142 | BS BS 5142bp | 2465..2510 | 604..560 | 110 | 73.9 | Minus |
UFO08727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:43 Download gff for
UFO08727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31477-RB | 161..364 | 1..206 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:14:08 Download gff for
UFO08727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31477-RA | 189..392 | 1..206 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:25 Download gff for
UFO08727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31477-RA | 189..392 | 1..206 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:25 Download gff for
UFO08727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10122019..10122217 | 1..200 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:14:08 Download gff for
UFO08727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5947741..5947939 | 1..200 | 98 | == | Plus |
