UFO08731.5prime Sequence
1120 bp (1027 high quality bases) assembled on 2011-08-05
> UFO08731.5prime
CAGTCGACATGAGTCACAATGGGGCTGGTTTGGGAGCCGGATCCGGCGGA
TCGCCCATCCCGCCAACCACGGTCATGTATTCCCAATTGCAGCCATGGAG
CCAGGCGGGCGCTCCGCCCTGCATGGAGCCCGTCATGGGGCCTTCGATCC
CGCCGAGAGTTGGCGCCGCCTACGAGACGCCCACGAAGCACCCGTGGCGC
CCTGCTATGGCCTATGAGCTAATCCAGGTGAAGCATATGCCCGAGCAGCC
GGTGACCAACCAGCTGACCAAGCAGTGCTTCCTGCCCAAGGGCATGAAGA
CGGACGGCATGATATTCCCCAACTTGGTCACCGGGTTCGATCGCAATCCA
CAGCACGCCGCCCGGGCTGCCCTCTACACGCGGTACACCAGCAACGAGTG
GTACAACAACAACATGACCAAGTACTCCGAGTCGAACATGAATCGCAACC
TCTCGGAGCGCATGCGGAATGACGCAGTGCGTCTGATGCGGGAGACGGAC
GAGAAGGCCACCTCGGGCCAGAGGGACGCCGGCCGAAGGCTGGGCGAGCG
CATCACCGACCTGACCTTCTGGCGCAACGAGCTGAACGCGGAGCTGGAGA
AGCTGATCGCCGAGATGTCGGACATCAACGAGCTGCAGCGGCAGTGCGGC
AAGGCACTTCTCGACCTGGAGATACCACTGCACATCGCCCAGGAGTGCCT
CTTTCACCGAGAGTCGCGCCAGGGCACGGAGAAGGTGCATGACATCGTGG
AGAAGGCCCTCCTCGTTGAGATCAACAACTTGAGGAACTCCCGTGACCGG
CTAGGCGGCCTGCACGAGAAGATCTCGAAGCAGGCCCTCGACTGCCGCGG
CGCCCAGCATCTCCTCGAGGACGATGTGTCGCACAAGGAGTCCTCGCTCG
GCATCGACTCCATGTGCCACAGCTGACAACCACAGCCGCGGCATCACTAC
TACGGCGGCATCGAGAAGTTCGATCCCTCGGTCAGCACCCAGAGTCCTGG
GGCGCCAGGCCAGCAGCGAGCACGTTCCGCGTTCCCAGGCGGGAGGCGCG
AAGCTTTCCCAGCTGCGGAGCGATGCCAGAGTGGTGTCAACTCGTGCCAC
CACGGGTTGGGAATCTGACA
UFO08731.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32820-RB | 2034 | CG32820-RB | 149..1248 | 9..1103 | 5165 | 98.6 | Plus |
| CG32819-RB | 2034 | CG32819-RB | 149..1248 | 9..1103 | 5165 | 98.6 | Plus |
| CG17450-RC | 1922 | CG17450-RC | 149..1248 | 9..1103 | 5165 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21606802..21607384 | 1025..445 | 2630 | 98.3 | Minus |
| X | 23542271 | X | 21612894..21613476 | 1025..445 | 2630 | 98.3 | Minus |
| X | 23542271 | X | 21618986..21619568 | 1025..445 | 2630 | 98.3 | Minus |
| X | 23542271 | X | 21607507..21607943 | 445..9 | 2185 | 100 | Minus |
| X | 23542271 | X | 21613599..21614035 | 445..9 | 2185 | 100 | Minus |
| X | 23542271 | X | 21619691..21620127 | 445..9 | 2185 | 100 | Minus |
| X | 23542271 | X | 21606569..21606633 | 1094..1031 | 200 | 90.8 | Minus |
| X | 23542271 | X | 21612664..21612728 | 1094..1031 | 200 | 90.8 | Minus |
| X | 23542271 | X | 21618756..21618820 | 1094..1031 | 200 | 90.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:42:51 has no hits.
UFO08731.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:45 Download gff for
UFO08731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32819-RB | 136..1244 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:15:37 Download gff for
UFO08731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17450-RA | 140..1248 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:32 Download gff for
UFO08731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17450-RC | 140..1248 | 1..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:32 Download gff for
UFO08731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21612673..21612727 | 1032..1086 | 92 | <- | Minus |
| X | 21612888..21613475 | 446..1031 | 98 | <- | Minus |
| X | 21613599..21614039 | 1..445 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:15:37 Download gff for
UFO08731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21483700..21483754 | 1032..1086 | 92 | <- | Minus |
| arm_X | 21483915..21484502 | 446..1031 | 98 | <- | Minus |
| arm_X | 21484626..21485066 | 1..445 | 99 | | Minus |
