UFO08732.5prime Sequence
1132 bp (1015 high quality bases) assembled on 2011-08-05
> UFO08732.5prime
CAGTCGACATGGAGAGGATCATGGGCAGGAATGGATCGCTCCTACTGACC
GCCGTCCTCATAATTATCCTGGATGTTTTGCTTGCACCAGTGGGTGCCAA
CCTGTGGACACGACACAATAGCAATGCCTATCAAACCAGGAGGCGCTCAG
GTCCCAGCAATCGGTGTCCCAAGGTGGGAGCCATTAAGAACTTCGATTTG
GAGCGCATGATGGGCTGTTGGCACGTGGTTCAGTATTACGCATCCACAGA
GGAACTTCCGGAGTACGCGTGCATGCGCAGTCACTTTTCCTTTTCCAAAG
AGGATCAGCATATAACGATGAACTTTAGCTACATATTTGCGGAGGATCCG
CTGCGCGAGAAGCTCGTGGGCAACATCACCTGGATGATACCCAAATTCCA
AGAGCCAGGACATTGGCAGCACACGGATGTCATATATGAGGGCATCTACA
ACACATACGTTCTGGACACGGACTACGACACCTGGGGCCTGGTGATGCAC
TGCGCCGAGAAGAAGAAGCAACCACGTTACCTGTCCGCCCTGCTTTTGTC
GCGGAAAACATCGTTGGCCGACAACGAGATCAGCTTTCTGCGCGGCAAGT
TGCCGCAGGATATCGACACATCCTTTATGTTTAACATCGGGCAGGAATCG
TGCGACAATCTAATGGAATCCAGTCGCGACGATCCACTGGCCTATGTGGT
GAATGGACGCAAGAGAGCCAAGGAAATCTTCAAAATTATCAATAAGCCTG
ACGGCAGAGTGCGCGCTAGTAGCGAAGCGAGAAGCTATGAGCAAAGCGAG
AAGCTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGGC
GGCACGAGCGTTCTGAACAAATCCAGATGGAGTTCTTGAGTCATTACTGA
TTTTTTCAACAGGAGTCAGCGAGCCTCGATATCAATTACGCCCCGCCCTG
CCACTTATCGGAAGTACGTGAGTCAATAGCATTTGCGAACTTGAGCCATC
ACAAACGCCATGATTAACCTGAATCGCCCAGC
UFO08732.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Karl-RD | 1774 | CG4139-RD | 452..1249 | 9..806 | 3930 | 99.5 | Plus |
| Karl-RC | 2447 | CG4139-RC | 1125..1922 | 9..806 | 3930 | 99.5 | Plus |
| Karl-RB | 1418 | CG4139-RB | 96..893 | 9..806 | 3930 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11791358..11791728 | 436..806 | 1825 | 99.5 | Plus |
| X | 23542271 | X | 11788939..11789105 | 9..175 | 835 | 100 | Plus |
| X | 23542271 | X | 11790856..11790995 | 172..311 | 700 | 100 | Plus |
| X | 23542271 | X | 11791061..11791189 | 312..440 | 600 | 97.7 | Plus |
| 2R | 25286936 | 2R | 5467084..5467137 | 802..749 | 240 | 96.3 | Minus |
| 2R | 25286936 | 2R | 858324..858385 | 809..748 | 205 | 88.7 | Minus |
| 2L | 23513712 | 2L | 22794705..22794766 | 748..809 | 205 | 88.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:42:56 has no hits.
UFO08732.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:46 Download gff for
UFO08732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karl-RB | 94..896 | 9..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:16:07 Download gff for
UFO08732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karl-RA | 96..898 | 9..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:34 Download gff for
UFO08732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karl-RB | 96..898 | 9..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:34 Download gff for
UFO08732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11791061..11791184 | 312..435 | 98 | -> | Plus |
| X | 11788939..11789103 | 9..173 | 100 | -> | Plus |
| X | 11790858..11790995 | 174..311 | 100 | -> | Plus |
| X | 11791358..11791733 | 436..812 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:16:07 Download gff for
UFO08732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11685094..11685217 | 312..435 | 98 | -> | Plus |
| arm_X | 11682972..11683136 | 9..173 | 100 | -> | Plus |
| arm_X | 11684891..11685028 | 174..311 | 100 | -> | Plus |
| arm_X | 11685391..11685766 | 436..812 | 98 | == | Plus |
