UFO08735.5prime Sequence
1090 bp (986 high quality bases) assembled on 2011-08-05
> UFO08735.5prime
CAGTCGACATGCAGCGTTCGTCTTATCCTCTATGCCACATTGTGCGACCC
AGCTTGACTGGGCTTTTAGGCGGCGGATGGATTGACCTTCGAAGGACTAT
GGCCTCAGATTCGTGGGGACGGGGTGACGGCAATAGCCAGCCCAATTCGC
CAAGGGCTGGCGTTTCGCGTGCCAGTGCCACATCGACGGTGATAAGTGAT
GCCAGCTCCTATTCGCGTGGCGTCAACACTGGTGCTTTCGAGCGACGCAT
CAATCGGGAGGATAATATGTGGAGGGATCAGAGCTATATCGATACAAAAT
GGTTAAATCCTCGCGATCCCAATGCCTATCGACCGAATTTCCGTCAAACA
GAGCCGACATCGTTGCGCAAGCAATTCATGCGCAGTCCGGATGAAATATC
CCGTGAGGTGATGGGTCGTGATTGGTAGGAAACGGTCAGGACATATAAAC
GCAACGCCCAGAGCAAACACAGTGTGGCGCGCACAGAGGAGCGGCAATCT
TCGGATAATACACGTAATCGCCAGCAACATTTGCAATTAATGCACATGCA
ACAGCAACAAAGGCAACAGCAGCAACATAAGAAAAATCAGCAGCAGTACA
ACAATTGGGGCAGGAGTGTGGAGTCCCCCGAGGATCAAGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCACTCATCGCAGT
ACTGTTGTATTCATTAGCATTCTGCGACATGGAGCATCACAAACGGCATG
ATGACTGATCGCAGCGGCATCAGCACTGTCGCTGCGTATATATTTGCCAT
GGTGAAACGGGGGCGAGAGTGTCAATTGCCACGTTTAATTCAACTGGGAC
TCACCAGGATGCTGAAACGAAACCTTTTCATAACCGTGAG
UFO08735.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1999-RA | 1091 | CG1999-RA | 164..794 | 8..638 | 3140 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7359131..7359761 | 8..638 | 3140 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-26 23:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2471 | 413..604 | 180 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6856 | 522..616 | 180 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6838 | 522..616 | 178 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6873 | 522..603 | 178 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1616 | 522..606 | 170 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2243..2387 | 459..604 | 168 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2441 | 522..613 | 167 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6807 | 533..615 | 167 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6888 | 522..603 | 167 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2837 | 521..596 | 166 | 71.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1153 | 522..604 | 158 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6786 | 540..615 | 157 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2356 | 539..598 | 156 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6823 | 522..616 | 155 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2581..2656 | 534..612 | 154 | 71.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2462 | 522..616 | 153 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2580..2681 | 501..605 | 150 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2415..2492 | 522..604 | 142 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2429..2516 | 512..604 | 138 | 66 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1116 | 549..603 | 133 | 73.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2872 | 549..618 | 129 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2401 | 522..603 | 128 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1097..1181 | 522..606 | 128 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6947 | 522..642 | 127 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1593 | 534..604 | 127 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1583 | 547..616 | 120 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6858..6922 | 517..581 | 118 | 64.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1162 | 484..596 | 116 | 58.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3341 | 552..613 | 114 | 66.7 | Plus |
UFO08735.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:41 Download gff for
UFO08735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1999-RA | 164..797 | 8..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:12:05 Download gff for
UFO08735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1999-RA | 164..797 | 8..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:15 Download gff for
UFO08735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1999-RA | 164..797 | 8..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:15 Download gff for
UFO08735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7359125..7359764 | 1..642 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:12:05 Download gff for
UFO08735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7253158..7253797 | 1..642 | 98 | == | Plus |
