UFO08736.5prime Sequence
1112 bp (1009 high quality bases) assembled on 2011-08-05
> UFO08736.5prime
CAGTCGACATGATGAAGAAGTTACTAAGCAACGGCTCGAACAAAAATAAA
ACTCTTAAGTTCGACGAGGGAATCAATTTGGACCAAATAATTGCAAAGCT
AAAACTAATCGGAGAGATAGGATCCGTGGTTCAGATTTCCGTCCGGGAAA
TCGAAGCGGTTTGTTCTCGGGCCAGGGAAGTACTGCTCAAACAGCCAACT
CTGCTGGAGATTCCTGCTCCGATTAATTTACTGGGAGACATACACGGTCA
GTACCTAAATCTCTTGCGCTATTTCGAGTCCAATGGCTATCCGCCGGATT
CGGTGTATCTGCTACTGGGTGATTATGTGGACAGAGGCAAGCAGTCCATC
GAAACATTGACCCTGCTACTGGCCCTCAAGGCAAGGTATCCGACCAAGTT
CTACCTACTAAGAGGAAACCACGAGTGCTCCAGTATAAATCACTTCTACG
GATTCTACGACGAGTGCAAAAGGCGATACACGGTGAAGTTGTGGCGCACT
TTTGTAGATTGCTACAACTGCCTGCCACTGGCGGCGATCATCGAGGAGAA
TATCTTCTGTTGCCACGGCGGTCTGAGTCCCCATCTGTTTAGCATGCAGC
AGATACGGGAAATTCGCCGGCCCATCGAAATACCGGAATCCGGATTGATA
TGCGATATTCTGTGGTCCGACCCTGATCTGCGGATCATGGGCTGGGGTCC
CAACGAAAGGGGCGTGAGCCACACCTTCGGTTCAGATGTGGTCAGTGCCT
TCTTGCACCGATTCAAATTGAACCTCATTTGTCGGGGTCACCAGGTGGTC
GAGGATGGCTACGAGTTCTTCGCCAAGCGCCAGCTGATCACAATTTTCTC
GGCCCCAAACTACTGCGGGGAGTTCGATAATGCTGGGGCCATGATGTGCA
TCAATCATGATTTGTTGTGCACTTTTCGAGTTCAGAGCCATACTATCGGA
GCAGAGAGACTTTCAGATATTAGTGTGCAGCTTTCTAGACATTCGTTGGC
CGCGCGGGCCCAGGTAAGTGTCAATATCATATCATAATCATAATTCAAAT
CAACCTAGCTAGAGATCTGTCATGACTATGCTTGATTCCCACAATAAAAC
GTCCTGCGCACG
UFO08736.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PpN58A-RA | 1182 | CG3245-RA | 86..1056 | 9..976 | 4720 | 99.3 | Plus |
| Pp1-87B-RA | 2203 | CG5650-RA | 593..1073 | 417..897 | 475 | 73.9 | Plus |
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 753..1233 | 417..897 | 430 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21881478..21882448 | 976..9 | 4665 | 99.2 | Minus |
| 3R | 32079331 | 3R | 12424845..12425325 | 897..417 | 470 | 73.2 | Minus |
| 2R | 25286936 | 2R | 22041989..22042067 | 867..789 | 290 | 91.1 | Minus |
| 2L | 23513712 | 2L | 3110183..3110325 | 445..587 | 280 | 79.7 | Plus |
| 3R | 32079331 | 3R | 24519974..24520079 | 772..877 | 245 | 82.1 | Plus |
| 3R | 32079331 | 3R | 24519597..24519751 | 453..607 | 220 | 76.1 | Plus |
| 2R | 25286936 | 2R | 17955680..17955755 | 868..793 | 200 | 84.2 | Minus |
| 2R | 25286936 | 2R | 22042269..22042398 | 587..458 | 185 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:42:23 has no hits.
UFO08736.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:42 Download gff for
UFO08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpN58A-RA | 86..1056 | 9..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:12:34 Download gff for
UFO08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpN58A-RA | 86..1056 | 9..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:18 Download gff for
UFO08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpN58A-RA | 86..1056 | 9..976 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:18 Download gff for
UFO08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21881499..21882448 | 9..956 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:12:34 Download gff for
UFO08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17769004..17769953 | 9..956 | 99 | | Minus |
