UFO08738.5prime Sequence
1125 bp (1018 high quality bases) assembled on 2011-08-05
> UFO08738.5prime
CAGTCGACATGAAGAACCGCCAGCGAACGCGCCGAATATCGCTAAATGAA
AACCACAACAGATACATGGGCAGCGGCGGCATCGATGTACAAATAGTTAC
CAATACAAAGGAGCCCAATCAAGTCAATTTAAATTCATCGTCAGCCACGA
CGACCTCAGCGGAGGCTGCTCTGCCCGCTTCGCTTCCACTTGCTCAGATA
GCGCAGCAGCCACATACCCATCCCCATCCCCATCCCAATCCCCATCTCCA
CCAGCAACACCAGCTGATTGTGACGCCCACAACGATGACGGGCAAGTATC
ATCCAGCGCACGCCAAGCTGCGAAGATGCAAATCGACGCCGAGTCTCAAT
TGCGATGGCATGGCGGAGCCCATGGAGGAGGACCAGCTCCATCGCTTTGC
AGCATGCTCACGTAACCCCGCCGCGGAGGCTCAGCAGCATGCACAGCCAT
CGTGCAACAGCAGCAGCAGCAGCAGCGACGGCAGCTGCAACAGCAACAAG
TGCAGCAGCAACATCTGCGGTGCGCAGCCAACAACTCCGGAGTCATTGCG
CTTCGGATGCGCTCACTACAAGCGGCGGGCCATGTTCGTGACCCCCTGCT
GCAACAAGTTCTACAAGTGCCGATTTTGCCACGACGAGAACGAGACGCAT
CACTTCGATCGCAAAACGCTCACCGAACTAATATGCTCCGAGTGCAATAC
GCGGCAAACGGTGCGAGAGCAGTGCCTCAATTGCGGCGTGAGATTTGGTA
AGTACACCTGCCTGATCTGCAACCTCTTCGATGATGCGGACAAGCAGCAG
TACCATTGTCATGGATGTGGGATTTGTCGCATTGGCGGTGCGGAGAACTT
CTTCCACTGCGAGGTGTGCAACATGTGCCTACCTATTCAGCTGAAGATCG
ATGGCCACCGGTGCGTGAGAACATCTCGCGATCGCACTGCCCCGTGTGCT
GGGCGACATCCACACTTCGCGCATACCTGCACATTCCGGACTGCGACACC
TGCTGCACAAGATGTGCTTCGACAGCTGCTGGCCTCGGCCACTACACTGT
CCCACCTGCCAGAACCTCGCTGATCGATATGACCGGCGCTGTGTGGTATA
CTTGACGAACAGCGGAACCACTGCC
UFO08738.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16947-RB | 1927 | CG16947-RB | 416..1525 | 9..1112 | 5220 | 98.7 | Plus |
| CG16947-RA | 2252 | CG16947-RA | 438..1547 | 9..1112 | 5220 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6463262..6463843 | 590..9 | 2910 | 100 | Minus |
| 2L | 23513712 | 2L | 6460323..6460483 | 911..751 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 6460555..6460717 | 752..590 | 800 | 99.4 | Minus |
| 2L | 23513712 | 2L | 6459797..6459988 | 1104..917 | 465 | 93.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:43:15 has no hits.
UFO08738.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:48 Download gff for
UFO08738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16947-RA | 1..1124 | 9..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:18:07 Download gff for
UFO08738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16947-RA | 431..1561 | 1..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:42 Download gff for
UFO08738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16947-RA | 431..1561 | 1..1125 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:42 Download gff for
UFO08738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6459774..6459994 | 912..1125 | 92 | <- | Minus |
| 2L | 6460323..6460481 | 753..911 | 100 | <- | Minus |
| 2L | 6460555..6460716 | 591..752 | 99 | <- | Minus |
| 2L | 6463262..6463850 | 1..590 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:18:07 Download gff for
UFO08738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6459774..6459994 | 912..1125 | 92 | <- | Minus |
| arm_2L | 6460323..6460481 | 753..911 | 100 | <- | Minus |
| arm_2L | 6460555..6460716 | 591..752 | 99 | <- | Minus |
| arm_2L | 6463262..6463850 | 1..590 | 99 | | Minus |
