UFO08739.5prime Sequence
832 bp (826 high quality bases) assembled on 2011-08-05
> UFO08739.5prime
CAGTCGACATGCAGCAGCTCCTGGTCGTGGCCCTGGTGGCGGTGGCCATC
GCGTCCTTGCCCCAACTGGCCGCAGGTAAAAAGCTGGGGAAGCGCTGCGT
GAACTGCACGTACCGCACTTACTACACCTACGGCGATGGGCGATCCCTGC
AGCGGGTTGTCTATAGAGATCCGGTCTACACACGTGCGCAGTCCTACGCG
AGCGGATGCAGCGGTAGCCCGTGCGGCGTGAACGCCGTGTGCCAGGAGGC
CTCCGGAGGACGGCCCGTCTGCTCGTGCCCGCCCGGATTCAGCGGTAATC
CGCTCACCCACTGCAATCGCGGCGAGTGCCTGGACAACGTCGACTGTCGC
GACAACCTGCAGTGCAAGGACAATCGCTGCGTTAATCCCTGCGTGGGTGC
CTGTGGCATTGGCTCCAATTGTGACGCCCGCAACCACGTGGCCGTGTGCA
GCTGCCCCGCCGGCTACAATGGCGACCCATACCACGCCTGCCACCTCAAC
GATCCGGAGGAGCAGTGCCATCCCAGTCCGTGCGGCGTTAACACCAAGTG
CGAGATCATCAACGGCGTGCCCACCTGCTCATGCGTTCACGGCTATGTGG
GCAATCCGCTGAGCGGCTGTCGCCACGAGTGCGATCACGATGGCGACTGC
AGCAGCCGGGACATGTGCTCCAGCAACTTCAAAGTGCGTGCCGGCATGCG
GGCAGTGCGGCACTGGCGCCACCTGCCGAACGGTCAGCAATCACCGGGCT
GTCTGCGAGTGCCCCAAGGGCTACTTTTGGCAGCCCGTACACCGGAGTGC
CGACCGGAGTGCATGGCAATGCCCGACTGCCC
UFO08739.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9572-RA | 1667 | CG9572-RA | 136..956 | 9..832 | 3970 | 99.2 | Plus |
| CG9572-RB | 1664 | CG9572-RB | 138..953 | 14..832 | 3945 | 99.1 | Plus |
| CG9572-RD | 1556 | CG9572-RD | 202..845 | 186..832 | 3085 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20154197..20154499 | 507..812 | 1365 | 98.7 | Plus |
| X | 23542271 | X | 20150597..20150837 | 186..426 | 1205 | 100 | Plus |
| X | 23542271 | X | 20150061..20150236 | 11..186 | 880 | 100 | Plus |
| X | 23542271 | X | 20150945..20151026 | 426..507 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:43:19 has no hits.
UFO08739.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:49 Download gff for
UFO08739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9572-RA | 134..954 | 9..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:18:38 Download gff for
UFO08739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9572-RA | 136..956 | 9..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:42 Download gff for
UFO08739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9572-RA | 136..956 | 9..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:42 Download gff for
UFO08739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20150598..20150836 | 187..425 | 100 | -> | Plus |
| X | 20150945..20151026 | 426..507 | 100 | -> | Plus |
| X | 20154198..20154519 | 508..832 | 97 | | Plus |
| X | 20150053..20150236 | 1..186 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:18:38 Download gff for
UFO08739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20044631..20044869 | 187..425 | 100 | -> | Plus |
| arm_X | 20044978..20045059 | 426..507 | 100 | -> | Plus |
| arm_X | 20048231..20048552 | 508..832 | 97 | | Plus |
| arm_X | 20044086..20044269 | 1..186 | 97 | -> | Plus |
