UFO08742.5prime Sequence
1143 bp (1030 high quality bases) assembled on 2011-08-05
> UFO08742.5prime
CAGTCGACATGTTGTTGTGCGACGGACTTGGCCCGGAGCCACCGCGGCAA
AGGCATCGAAATCGAACCAGTGCCGCCAGGATTAGAAAAAGACCGAAATG
CTGCTGCGGCGATGGCGGCAGCGGCAATCAGGCGGAGCAGCCCGGCGGGA
TAGTTAGCAACCCAATTAGTTATGGCCAAAGTCTGACAACATTGGCGCGG
GTCACGGCGGCCGCACTGACCACGGCGGCCATGCTGCACACAACGAATGC
CCTGGCTGCCACCGGCTCATCCAGCGCATCCAACTCTTCCACCGGCGGAA
TAGCACTGCCGCTGGGCACTGCCACACCTGCCACACACGAACTGAATGCC
ACACAGCCGTTTGGCGGCTCGGGTCTGAACTTCAACGAAAGCGGCGCAGG
ATTAAGTGACCATCATCATCATCAACAACACAATCCCGACGAGGATTGGC
TGGACAACATCGTTTGGGTGTTCAAGGCCTTTGTCATGCTGCTCATCATC
ATTGCGGCCATCTGCGGCAATCTGCTTGTTATTATTTCTGTGATGCGTGT
TAGAAAATTAAGAGTTATAACGAATTACTTTGTAGTTTCCTTAGCCATGG
CTGATATAATGGTCGCTATTATGGCCATGACATTTAACTTTAGTGTGCAA
GTAACTGGGCGGTGGAACTTCAGCCCCTTCCTGTGCGATTTGTGGAACAG
CCTCGATGTCTACTTCTCAACAGCGAGTATTTTGCATTTATGCTGCATAT
CTGTGGATAGATACTATGCTATTGTTAAGCCCCTCAAGTATCCGATTAGC
ATGACGAAACGCGTGGTCGGCATTATGCTGCTAAACACATGGATATCGCC
GGCACTGCTCTCCTTCTTGCCCATCTTCATCGGCTGGTACACCACGCCGC
AGCACCAGCAGTTCGTCATCCAGAATCCGACGCAGTGCTCGTTCGTGATG
AACAAGTACTACGCCGTCATCTCGAGCTCCATATCGTTCTGGATACCCTG
CACCATTATGATATTCACCTACCTGCCATCTTCGGAAGCCAATCGGCAGA
AAAGCACTGATGATGCGCAACGCCAATGCAATGCTGTATGCCCGACCATC
ATGCAACCCATCAGCAAGGCCTTGACCGAATCGTTCTCTCAAA
UFO08742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Octbeta2R-RG | 6672 | CG33976-RG | 2760..3871 | 8..1114 | 5250 | 98.6 | Plus |
| Octbeta2R-RE | 6593 | CG33976-RE | 2681..3792 | 8..1114 | 5250 | 98.6 | Plus |
| Octbeta2R-RD | 3063 | CG33976-RD | 1015..2126 | 8..1114 | 5250 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12560401..12560955 | 562..8 | 2775 | 100 | Minus |
| 3R | 32079331 | 3R | 12554272..12554604 | 1086..759 | 1360 | 96.7 | Minus |
| 3R | 32079331 | 3R | 12556975..12557077 | 663..561 | 515 | 100 | Minus |
| 3R | 32079331 | 3R | 12554676..12554775 | 760..661 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:43:28 has no hits.
UFO08742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:51 Download gff for
UFO08742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Octbeta2R-RC | 1174..2250 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:19:34 Download gff for
UFO08742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Octbeta2R-RC | 1174..2250 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:46 Download gff for
UFO08742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Octbeta2R-RD | 1008..2084 | 1..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:46 Download gff for
UFO08742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12554291..12554602 | 761..1067 | 97 | <- | Minus |
| 3R | 12554676..12554774 | 662..760 | 100 | <- | Minus |
| 3R | 12556977..12557075 | 563..661 | 100 | <- | Minus |
| 3R | 12560401..12560960 | 1..562 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:19:34 Download gff for
UFO08742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8380013..8380324 | 761..1067 | 97 | <- | Minus |
| arm_3R | 8380398..8380496 | 662..760 | 100 | <- | Minus |
| arm_3R | 8382699..8382797 | 563..661 | 100 | <- | Minus |
| arm_3R | 8386123..8386682 | 1..562 | 99 | | Minus |
