UFO08743.5prime Sequence
1134 bp (1020 high quality bases) assembled on 2011-08-05
> UFO08743.5prime
CAGTCGACATGTCTCTGAATCTGCAGTACGAGGACATTGGCAAGGAATTT
GTCCAGCAGTACTACGCCATATTCGATGACCCGGCGAATCGGGAGAACGT
GATTAATTTCTATAACGCTACCGACTCTTTCATGACCTTTGAAGGCAACC
AAATACAGGGAGCACCCAAGATTCTGGAAAAAGTTCAGAGTCTGAGCTTT
CAGAAGATTGCCAGAGTGATAACCACAGTGGATTCGCAGCCAACTTCCGA
TGGCGGAGTTCTGATCATCGTCCTTGGAAGACTAAAATGCGATGACGATC
CCCCACATGCATTCTCGCAGATCTTTTTGCTGAAGCCCAACGGAGGATCC
CTCTTCGTGGCTCACGACATCTTCCGTCTGAACATCCACAACTCTGCCGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT
GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGAT
TGGCTGAGACGAAAACATATTCTCATAACCCTTTAGGGAAATAGGCCAGG
TTTTCACCGTAACACGCACATCTTGCGAATATATGTGTAGAAACTGCCGG
AATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTGCTCATG
GAAACGGTGTAACAGGTGAACACCTATCCCATATCACAGCTCACCCGTTT
TTTCATTGCATACGAATTCGGATGACCATTCATCAGCGGCAGAATGTAAT
AAGCCCGATAAACCTGGCTATTCTACGTCTTAAA
UFO08743.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntf-2r-RA | 771 | CG10174-RA | 119..508 | 9..398 | 1950 | 100 | Plus |
| Ntf-2-RE | 3078 | CG1740-RE | 146..535 | 9..398 | 1515 | 92.6 | Plus |
| Ntf-2-RA | 755 | CG1740-RA | 146..535 | 9..398 | 1515 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18454767..18455156 | 9..398 | 1950 | 100 | Plus |
| X | 23542271 | X | 21036536..21036634 | 186..284 | 435 | 96 | Plus |
| X | 23542271 | X | 21035614..21035719 | 9..114 | 410 | 92.5 | Plus |
| X | 23542271 | X | 21038746..21038856 | 288..398 | 390 | 90.1 | Plus |
| X | 23542271 | X | 21036399..21036470 | 117..188 | 315 | 95.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:43:33 has no hits.
UFO08743.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:51 Download gff for
UFO08743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntf-2r-RA | 46..435 | 9..398 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:20:04 Download gff for
UFO08743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntf-2r-RA | 119..508 | 9..398 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:48 Download gff for
UFO08743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntf-2r-RA | 119..508 | 9..398 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:48 Download gff for
UFO08743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18454767..18455156 | 9..398 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:20:04 Download gff for
UFO08743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18454767..18455156 | 9..398 | 100 | == | Plus |
