UFO08744.5prime Sequence
1124 bp (1054 high quality bases) assembled on 2011-08-05
> UFO08744.5prime
CAGTCGACATGTCCCTGCCATCCAGAGCCAATATCGGATTACTCAACTGG
CTCATCGGCTGGCTGCTGCTGCTGTCGATGGTTTTGCTCAGAGGCTACAA
CGCTGCGTTGGCACCCACGCCGCCCACAACGTCAACTACAACCATCTCGC
CCTCCAATCTGCTGCCCTACTTCGACTTTGATGTGCCGCGCAACTTGACC
GTAACCGTTGGCCAGACCGGCTTTCTCCATTGCCGCGTGGAACGACTCGG
CGATAAGGACGTCTCTTGGATACGCAAACGTGATCTGCATATACTCACCG
CCGGCGGCACAACCTACACATCCGATCAGCGTTTTCAGGTTCTGCGACCC
GATGGCTCCGCCAATTGGACACTGCAAATCAAGTATCCGCAGCCACGTGA
CTCCGGCGTCTACGAGTGCCAAATCAACACGGAGCCCAAGATGTCCCTGT
CGTACACCTTCAACGTAGTGGAACTCAAAGCGGAAATCTTCGGGCCCAGC
GATCTGATGGTGAAAACCGGCAGTGACATAAACCTAACATGTAAAATTAT
GCAAGGACCCCACGAGCTGGGCAACATATTCTGGTACAAAGGCAGCGAAA
TGCTTGATGGCAAGGGAGAAAACGAAATCGACAGCTCCATGGCCCGGATT
CGCGTCGAGGATGATTGGACTGACGGCCTGACTTCCAGATTAAAAATCAA
GCGCGCCATGCCCGGCGATACCGGCAACTACACCTGTGTGCCGACGGTGG
CAAAAACCTCGAGCGTCTATGTGCACGTAATTATTGGCGAACATCCTGCG
GCCATGCAACACAATTCGAGTAGCAACAGCAACAGCTTCTACTGCGGCAT
CTGCTGCATGCTGCTGAGCATTGTGTCCTGCTGCCTGCAGCATTTTTATG
AAACGGGGTGTGATATCTCCATGCCGCGGCAGCGTTGGCAAATCCGCGGG
ATTGGGGCCCCCCAAGCGAGCAACGCTAACGACCAGCGAACAGGATAGTG
CTGCAAAGTTGCAGCAGCGCAGGCGCCATCTGCAGCAGTAGCATCCGCAT
TAGCACGTGCAACATGTTGAAGGAACGCCCCAGCGGGCATTCCGTTCTGA
AGACAGCCTTTAAGAACCTCGTTG
UFO08744.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr-RB | 2859 | CG13439-RB | 704..1802 | 9..1100 | 5155 | 98.5 | Plus |
| dpr-RA | 3598 | CG13439-RA | 704..1802 | 9..1100 | 5155 | 98.5 | Plus |
| dpr2-RG | 1661 | CG33507-RG | 833..963 | 312..442 | 205 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20748325..20748626 | 786..1080 | 1055 | 96 | Plus |
| 2R | 25286936 | 2R | 20726043..20726213 | 92..262 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 20734315..20734450 | 336..471 | 680 | 100 | Plus |
| 2R | 25286936 | 2R | 20745784..20745905 | 471..592 | 610 | 100 | Plus |
| 2R | 25286936 | 2R | 20747422..20747523 | 686..787 | 510 | 100 | Plus |
| 2R | 25286936 | 2R | 20746004..20746102 | 590..688 | 495 | 100 | Plus |
| 2R | 25286936 | 2R | 20699186..20699271 | 9..94 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 20734170..20734249 | 261..340 | 400 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2740..2797 | 799..858 | 142 | 73.3 | Plus |
UFO08744.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:52 Download gff for
UFO08744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr-RA | 330..1426 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:20:32 Download gff for
UFO08744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr-RA | 697..1793 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:49 Download gff for
UFO08744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr-RA | 697..1793 | 1..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:49 Download gff for
UFO08744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20699179..20699270 | 1..93 | 96 | -> | Plus |
| 2R | 20726045..20726211 | 94..260 | 100 | -> | Plus |
| 2R | 20734170..20734247 | 261..338 | 100 | -> | Plus |
| 2R | 20734318..20734450 | 339..471 | 100 | -> | Plus |
| 2R | 20745785..20745904 | 472..591 | 100 | -> | Plus |
| 2R | 20746006..20746102 | 592..688 | 100 | -> | Plus |
| 2R | 20747425..20747522 | 689..786 | 100 | -> | Plus |
| 2R | 20748326..20748637 | 787..1092 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:20:32 Download gff for
UFO08744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16586684..16586775 | 1..93 | 96 | -> | Plus |
| arm_2R | 16613550..16613716 | 94..260 | 100 | -> | Plus |
| arm_2R | 16621675..16621752 | 261..338 | 100 | -> | Plus |
| arm_2R | 16621823..16621955 | 339..471 | 100 | -> | Plus |
| arm_2R | 16633290..16633409 | 472..591 | 100 | -> | Plus |
| arm_2R | 16633511..16633607 | 592..688 | 100 | -> | Plus |
| arm_2R | 16634930..16635027 | 689..786 | 100 | -> | Plus |
| arm_2R | 16635831..16636142 | 787..1092 | 95 | | Plus |
