UFO08745.5prime Sequence
1106 bp (1017 high quality bases) assembled on 2011-08-05
> UFO08745.5prime
CAGTCGACATGCCGTACAACATGGACGTACTGATACCGGAAAAGGACGAG
CTCTCCGACTTGAAGCTAAAAGATGCGCACAGTTCCCTGGACGAACTGGA
CATGGAGGATCTCTACGTGCGTTACAAGAAACTGCAAAAGACACTGGAGT
TCATTGAAGTGCAGGAGGAGTACATCAAGGACGAGCAGCGAAACCTGAAA
AAGGAGTATCTGCACGCCCAGGAGGAGGTGAAGCGCATCCAGTCGGTGCC
GCTGGTGATTGGCCAGTTCCTGGAGGCCGTCGATCAGAACACGGGCATTG
TGGGCTCCACCACCGGCTCCAATTACTATGTGCGCATCCTGTCCACCATC
GATCGCGAGCTGCTGAAGCCCTCCGCCTCGGTGGCCCTGCACAAGCACAG
CAACGCGCTGGTGGACGTGCTGCCACCAGAGGCGGATAGCTCCATTTCGA
TGCTGCAGCCGGATGAGAAGCCCGACGTTAGCTATGCGGACATTGGTGGC
ATGGACATGCAGAAGCAGGAGATCCGCGAGGCAGTCGAACTGCCGCTGAC
CCACTTCGAGCTGTACAAGCAGATTGGCATCGATCCGCCGCGCGGCGTGC
TTATGTACGGTCCGCCCGGTTGCGGCAAGACCATGTTGGCCAAGGCGGTG
GCCCATCATACGACGGCGTCGTTCATACGCGTCGTCGGCTCGGAGTTCGT
GCAGAAGTACCTCGGCGAGGGACCGCGCATGGTGCGCGACGTTTTCAGCT
GGCCAAGGAGAACGCGCCGGCCATCATCTTCATTGACGAGATCGATGCGA
TTGCCACGAAGCGTTTCGATGCGCAGACTGGCGCCGATCGCGAGGTGCAG
CGCATTCTGCTCGAGCTGCTCAACCAGATGGACGGTTCGATCAGACCACG
AACGTTAATGTGATCATGGCTACCAACAGGGCGGACACACTCGATCCGGC
ATTGCTGCGACCTGTCGATTGATCGTAGATTGAGTCCCGCTGCCCGATCG
CGGCAGAAGCGACTCGTCTTTCTCCAACATCACTCGAAGAATGACCTTAC
GAGGATGTCGATTTGGAAGAATTTGTGCCGACGACCAGATCTCGTGCGAT
TCACGC
UFO08745.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3-RB | 1553 | CG16916-RB | 213..1289 | 9..1077 | 5020 | 98.4 | Plus |
| Rpt3-RA | 1423 | CG16916-RA | 83..1159 | 9..1077 | 5020 | 98.4 | Plus |
| Rpt3R-RD | 1414 | CG9475-RD | 145..929 | 144..926 | 1610 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11125563..11126521 | 127..1077 | 4180 | 98.1 | Plus |
| 3R | 32079331 | 3R | 9755619..9756052 | 577..144 | 820 | 79.3 | Minus |
| 3R | 32079331 | 3R | 9755220..9755572 | 926..576 | 750 | 82.2 | Minus |
| X | 23542271 | X | 11125421..11125506 | 43..128 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 23753922..23754049 | 750..877 | 235 | 78.9 | Plus |
| X | 23542271 | X | 11125313..11125349 | 9..45 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:43:43 has no hits.
UFO08745.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:53 Download gff for
UFO08745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3-RA | 124..1210 | 6..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:21:03 Download gff for
UFO08745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3-RA | 81..1167 | 6..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:50 Download gff for
UFO08745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3-RA | 81..1167 | 6..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:50 Download gff for
UFO08745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11125311..11125348 | 6..44 | 97 | -> | Plus |
| X | 11125423..11125506 | 45..128 | 100 | -> | Plus |
| X | 11125565..11126514 | 129..1068 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:21:03 Download gff for
UFO08745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11019344..11019381 | 6..44 | 97 | -> | Plus |
| arm_X | 11019456..11019539 | 45..128 | 100 | -> | Plus |
| arm_X | 11019598..11020547 | 129..1068 | 98 | -> | Plus |
