UFO08748.5prime Sequence
1103 bp (1031 high quality bases) assembled on 2011-08-05
> UFO08748.5prime
CAGTCGACATGAACTTTGAGCAGGTCAATATACCAGAGAAACTAGTGCCG
GACAACTATTTGCAACTGGGACTGGCTGCGCAACGCAGTAAGCAGCGCAG
TTTTAAGGAGCTGCTCGAAAAGCGAAAGCTTCCGAAAAATGGTTGGTCCG
ATGAACGTATCGAGGAGCTGGTGCACATGCTGGCTTCCTTGGACAGCAAT
AACTATCCACATAAGGTCGGTTTAGGAGAGCGGGAGGCGCGTATAGCCTG
CAAACTCGTGGCTCGCCGTCACTACAACTTCGGTCATGGTATCGGCAGAT
CTGGAGACTTACTAGAGGCACAACCCAAGGCAGCTGGCTCTACGCTGCTC
GCTCGTCTCACAAACGCCCTGATTCTGGACCTTATTCGGGGAATCGGACT
GCCCAGCTGTGCTGGCTGCTTTTTGGTGCCAATGTGTACAGGCATGACAT
TGACTTTGTGCCTGCAGAGTCTTCGCAAGCGGCGACCCGGGGCGCGGTAT
GTGCTCTGGTCCCGCATCGATCAGAAGTCCTGCTTCAAGGCCATCACAGC
AACGGGCTTGGTGCCGGTAGTCATCCCCTGCCTTATTAAAGGAGAGTCCC
TGAACACGAACGTAGATTTATTCCGAGAAAAGATAAAGTCATTGGGAGTG
GATAGCATCCTCTGCCTGTACACTACCACCAGTTGTTTTGCTCCACGAAA
CAGCGATGACATTGCCGAAGTATCCAAGTTGTCCAAACAATGGCAGATTC
CCCATCTGGTCAATAATGCCTATGGATTGCAGGCAAAGGAAATCGTTAAT
CAGTTGGAGTGCGCCAATCGAGTCGGACGCATTGATTACTTCGTTCAGAG
CAGCGACAGAATTTGCTGGTGCCAGTGGGTAGTGCCATTGTGGCCAGCTT
CAATGAGAGTGTGCTCCACGATGTGGCCAGTACTTATGCTGGGAGAGCTA
GTGTTCCCAGTCACTAGATGTCTGATGACGCTACTCCTCACTGGGCGCAA
TGGCTTTCGATGCTTTTCGATCAGCGGGGGCGAGAACTTCAATTACCTGG
AGAGAAGACTTAGAATTGCCGAAGCCACGCGGGAAGGAATGGTTAGACGC
CAG
UFO08748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1427-RC | 1580 | CG1427-RC | 124..1175 | 9..1056 | 5070 | 99.2 | Plus |
| CG1427-RD | 1574 | CG1427-RD | 124..1169 | 9..1056 | 4970 | 98.7 | Plus |
| CG1427-RE | 1534 | CG1427-RE | 368..1129 | 299..1056 | 3620 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5601914..5602713 | 253..1049 | 3680 | 98.8 | Plus |
| 3R | 32079331 | 3R | 5601730..5601862 | 120..252 | 665 | 100 | Plus |
| 3R | 32079331 | 3R | 5601556..5601669 | 9..122 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:43:06 has no hits.
UFO08748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:47 Download gff for
UFO08748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1427-RC | 117..1181 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:17:07 Download gff for
UFO08748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1427-RC | 117..1181 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:37 Download gff for
UFO08748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1427-RC | 117..1181 | 1..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:37 Download gff for
UFO08748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5601549..5601669 | 1..122 | 96 | -> | Plus |
| 3R | 5601733..5601862 | 123..252 | 100 | -> | Plus |
| 3R | 5601914..5602727 | 253..1063 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:17:07 Download gff for
UFO08748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1427271..1427391 | 1..122 | 96 | -> | Plus |
| arm_3R | 1427455..1427584 | 123..252 | 100 | -> | Plus |
| arm_3R | 1427636..1428449 | 253..1063 | 98 | | Plus |
