UFO08753.5prime Sequence
1146 bp (1025 high quality bases) assembled on 2011-08-05
> UFO08753.5prime
CAGTCGACATGGCCCTGGTGGACTATGGTGGCAGCAGCTCCTCCGCCTCC
GAGGATGAGGACTGCACCGAAAACATTCAAACTCCCGCGTTGATCACCTT
GAAAAGACCGGCCCTACCCAAAGCAGCCACCCTGCTGGGCCCCAAGAAGC
CCAAGCCCGAGGAGTTCGTCGAGGATGTGGTGGATGATCCCGCGGAACAT
GGCGGCCGCATGCGTAGTTTCAAGCATGAACGGGGAAACTGGGCCACTTA
CGTCTATGTGCCGGCAACAGCATGTGTTGACCAGCTGGAGGAGTTCCAAA
CGGAGGCCATTGCTCGTCTGGAGCCACACTTGGAACTGCAGCCGAACGAG
TCGCTCCATCTGAGCCTGAGTCGAACAGTGGTGCTGCAGTACCATCAGAT
CGATGAATTCTCCCGATCCTTGCAAAGCGCCCTCAACAGCTCTGCGGGAT
TCGCCGCCACTTTGCAGGGGCTGCGGATCTACACGAATGAGGAGCGAACC
AGGACCTTCATTGCTGCGCCCCTGGACGCTGCATTTGTGGAGAAGATGAC
TGCCATTCTGCAGCCCATCGACCAAGTGATGCTCGACTACCGGCTGCAAC
AGTTCTATGATCCGGCCTCGTTCCACGTCAGCCTTCTTTGGTGCGTTGGC
GACCAGGAGACACTGCTTAACGAAAAGCTCACGGAGTTAAAAGAGCTCCT
TGATGATCAGGACAAACTCTGCCTGGCGGTCAATGAGGTGCACCTAAAGT
GCGGCAACAAGGATTTTACCTACTCGTTGAAAGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATTTTATCAACAGGAGTCAAG
CGAGCTCGATTATCAAATTACGCCCCGCCTGCCACTCATTCGCAGGTTAT
TTTTTTTAATTTCATTAGCCATTCTGCGAACTTGCAGCCATCCAAACGCA
TGTATTGACTTGAATTCGGCCAGCGGCATTCAGACCTGTGCCTTTG
UFO08753.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16790-RA | 1028 | CG16790-RA | 75..848 | 9..782 | 3870 | 100 | Plus |
| CG16790-RB | 1008 | CG16790-RB | 75..828 | 9..782 | 3560 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:44:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9569649..9569994 | 448..103 | 1730 | 100 | Minus |
| 3R | 32079331 | 3R | 9569254..9569588 | 782..448 | 1675 | 100 | Minus |
| 3R | 32079331 | 3R | 9570043..9570140 | 106..9 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:44:19 has no hits.
UFO08753.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:57 Download gff for
UFO08753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16790-RA | 75..848 | 9..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:24:30 Download gff for
UFO08753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16790-RA | 75..848 | 9..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:04 Download gff for
UFO08753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16790-RA | 75..848 | 9..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:04 Download gff for
UFO08753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9569250..9569587 | 449..787 | 99 | <- | Minus |
| 3R | 9569649..9569990 | 107..448 | 100 | <- | Minus |
| 3R | 9570043..9570140 | 9..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:24:30 Download gff for
UFO08753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5394972..5395309 | 449..787 | 99 | <- | Minus |
| arm_3R | 5395371..5395712 | 107..448 | 100 | <- | Minus |
| arm_3R | 5395765..5395862 | 9..106 | 100 | | Minus |
