UFO08763.5prime Sequence
1113 bp (1032 high quality bases) assembled on 2011-08-05
> UFO08763.5prime
CAGTCGACATGGTCACGAACATGTCGCAGCCGCATTATTGCGGCACCGGC
ATCGATGATTTCCACACAAACTACAAATACTTTCACGGTTACTTCTCGCT
GATTGTCTGTATCCTGGGAACCATTGCGAATACCCTAAATATCATAGTGC
TGACCCGACGGGAGATGCGCTCCCCCACAAATGCCATACTCACGGGTCTG
GCTGTCGCCGATCTGGCTGTGATGCTGGAATACATACCCTATACGGTGCA
CGACTATATCCTCAGTGTAAGGCTGCCGCGAGAGGAGCAGCTCAGCTACA
GCTGGGCGTGCTTCATCAAGTTTCACTCGGTATTTCCCCAGGTGCTGCAC
ACCATCTCCATTTGGCTAACGGTGACGCTGGCAGTTTGGCGGTACATAGC
GGTAAGCTATCCGCAAAGGAATCGCATCTGGTGTGGAATGCGAACTACTC
TGATCACCATAGCCACGGCCTATGTTGTCTGTGTCCTGGTAGTGTCACCT
TGGCTGTACCTAGTCACAGCCATTGCCAAGTTCCTAGAGACTTTGGATGC
CAATGGCAAGACGATTGCCTCAGTGCCATTGAGTCAATACATTCTGGACT
ACAATCGGCAGGATGAGGTGACCATGCAGGTCATGTCGAGTACAACGCCA
GATGTTTCCTGGGCGATACCAAGTGATTCGGCCAATGGAACTGCAGTTAG
CTTGCTAAGTCTAACCACAGTGATACCCCTAACCACATTAAGCACTGGAG
TAACCACATCCTCGTCGTTGGGTGAGCGCAATGTGACTGTCTATAAGCTG
TATCACAGCGCACTGGCGCTGCGTGATCGGCAGTTCAGGAATGCGACCTT
CCTTATATACAGTGTCCTGATCAAGCTGATACCCTGCTTCGCACTGACCA
TTCTGTCTGTGCGGCTCATCGGTGCTCTGTGGGAGGCCAAAAGGAGGAGA
GATCCTGGCCTGTCATGCAGCCAACGATATGCAGCCATTGTCATGGAAAG
GTGGTGATTCCGACGCAACCCAGGAGCTGTTAACCTGCTGGAAGAGGAGA
AACGACCGATCGCACACGAAGGATGCTTCTGGGCGACTGCCTGACCTTCC
TGTCACCGACTTC
UFO08763.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MsR2-RC | 2918 | CG43745-RC | 553..1659 | 8..1109 | 5135 | 98.1 | Plus |
| MsR2-RB | 2918 | CG43745-RB | 553..1659 | 8..1109 | 5135 | 98.1 | Plus |
| MsR2-RA | 2592 | CG43745-RA | 227..1333 | 8..1109 | 5135 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2298153..2299168 | 71..1082 | 4670 | 98.4 | Plus |
| 3L | 28110227 | 3L | 2342673..2343073 | 96..496 | 1000 | 83.3 | Plus |
| 3L | 28110227 | 3L | 2297661..2297723 | 8..70 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:44:41 has no hits.
UFO08763.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:01 Download gff for
UFO08763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DmsR-2-RA | 224..1316 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:27:15 Download gff for
UFO08763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MsR2-RA | 224..1316 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:12 Download gff for
UFO08763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MsR2-RA | 224..1316 | 1..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:12 Download gff for
UFO08763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2297658..2297723 | 1..70 | 94 | -> | Plus |
| 3L | 2298153..2299179 | 71..1093 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:27:15 Download gff for
UFO08763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2297658..2297723 | 1..70 | 94 | -> | Plus |
| arm_3L | 2298153..2299179 | 71..1093 | 98 | | Plus |
