UFO08765.5prime Sequence
1133 bp (1021 high quality bases) assembled on 2011-08-05
> UFO08765.5prime
CAGTCGACATGGCAACGCAAAAGGAAGATCACACCGCCCTGGATCTCATA
ATCAAGTCACTCAAGTCGCCTACAATGGTCTGCGAGGGAACCCACTTTGA
CGGCAAGATTCCGCACACGTTCGTCATCTTTGGGGCGTCGGGCGATCTGG
CCAAGAAGAAGATCTACCCCACGCTCTGGTGGCTCTACCGCGATGACCTG
CTGCCCAAGCCGACCAAGTTCTGCGGCTATGCCCGTTCCATGCTGACCGT
CGATAGCATCAAGGAGCAGTGTCTGCCGTACATGAAGGTCCAGCCGCACG
AGCAGAAGAAGTACGAGGAGTTCTGGGCCCTCAATGAGTACGTGTCCGGC
AGATATGACGGACGCACTGGCTTCGAGCTGCTTAACCAGCAGCTGGAGAT
TATGGAGAACAAGAACAAGGCCAACCGCATCTTCTATCTGGCCCTGCCGC
CCAGCGTCTTCGAGGAGGTGACTGTCAACATCAAGCAGATCTGCATGTCG
GTCTGCGGTTGGAACCGCGTGATCATCGAGAAGCCTTTCGGCCGGGATGA
CGCCTCCTCGCAGGCGCTGAGCGACCATCTGGCCGGTCTGTTCCAGGAGG
ATCAGCTGTACCGCATCGATCACTACCTGGGCAAGGAGATGGTGCAGAAC
CTGATGACCATACGCTTCGGCAACAAGATCCTCAGCTCGACGTGGAACCG
CGAGAACATCGCCTCCGTGCTGATCACGTTCAAGGAGCCCTTCGGCACGC
AGGGTCGTGGGCGGCTACTTCGACGAGTTCGGCATCATACGCGACGTGAT
GCAGAACCATCTGCTGCAGATCCTCTCGCTGGTGGCCATGGAGAAGCCGG
TGAGCTGCCACCCGGACGACATTCGTGACGAGAAGGTCAAGGTGCTGAGA
GCATCGAGGCCCTGACGCTGGATGACATGGTGCTGGGCCAGTACCTGGGC
AATCCGCAGGGTACAAACGATGATGCGCCGCACGGGCTACGGTGGAGGAC
CCCACCGGTTAGGCAACGATTCGACCCGGCCCACTTAGGGCCCTCGGGCG
GGCTCAGATCACACGAGGCGCTTGGCCAGGGAGTGCCTTCATCCTGGCGC
GTGCGGCAGGGGCGTTGAACGAGGGCCAGGCGG
UFO08765.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:44:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zw-RA | 2092 | CG12529-RA | 351..1467 | 9..1133 | 5035 | 97.4 | Plus |
| Zw-RB | 2069 | CG12529-RB | 346..1444 | 27..1133 | 4945 | 97.4 | Plus |
| Zw-RC | 1797 | CG12529-RC | 75..1172 | 28..1133 | 4940 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19671108..19671608 | 505..1007 | 2305 | 99 | Plus |
| X | 23542271 | X | 19670482..19670745 | 26..289 | 1320 | 100 | Plus |
| X | 23542271 | X | 19670804..19671023 | 286..505 | 1100 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:44:50 has no hits.
UFO08765.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:02 Download gff for
UFO08765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zw-RA | 361..1394 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:28:23 Download gff for
UFO08765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zw-RA | 294..1327 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:17 Download gff for
UFO08765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zw-RA | 342..1375 | 1..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:17 Download gff for
UFO08765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19670484..19670743 | 28..287 | 100 | -> | Plus |
| X | 19670806..19671023 | 288..505 | 100 | -> | Plus |
| X | 19671109..19671616 | 506..1017 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:28:23 Download gff for
UFO08765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19564517..19564776 | 28..287 | 100 | -> | Plus |
| arm_X | 19564839..19565056 | 288..505 | 100 | -> | Plus |
| arm_X | 19565142..19565649 | 506..1017 | 98 | -> | Plus |
