UFO08767.5prime Sequence
1108 bp (1032 high quality bases) assembled on 2011-08-05
> UFO08767.5prime
CAGTCGACATGAACTACAATCCAAATCCGGCCTCAGCTGCCGGTCGCCCA
AGGCCGCCGAAGCGTGTGAGTGATGTTAACGCCATGGGACCCTCGGCTCC
GATGATGGGCGGTGGCGCCACCTTCATGGCCCCGCCCACCGGCCCCGGAA
TACTAGATCCCAATATGTACGGAGCACCTGCTCCGGCCCCGGTCAACAGC
TATGGCTTCGACCCCAATCTCGGCCAGCCCTCGCAGCACATTCAGCAGCC
ACCACAACAGCAGCCCGGATACGGATATGGAGCACCACCTCCCCAACAGG
CGGCTGGGCCACCCACCTACGGAATAGGAGCACCTCAGCCTGTAGCTCCA
CCCACTGGACAGTACCCACAGTTCGCCATGTTCCAGCAGCCCATCGTGCA
AGACATGGCTATGCAGTACGGTCAGAAACTAGCGGATCAGGGCAAGCAGA
TCATGGAGAATCAGTTCGAGAAGTGGGTGCCCGTAGCCAAGCTCAAGTAC
TACTTCGCAGTGGACAACGCCTACGTGGGCAGGAAGTTGCGCCTTCTGTT
TTTCCCCTATATGCATAAGGATTGGTCCCTGCGCTACGACCAAGAGCACC
CAGTGCAACCACGATATGATGTTAATGCGCCAGATCTCTATCTGCCCACC
ATGGGCTACATCACATACGTGATCGTAGCGGGTTTGCTTCTGGGCATGCA
GAAGCGATTTTCGCCGGAGCAGCTCGGCATTCAGGCCTCCAGCGCCATGG
CATATAGCATTTTCGAATTGGTCATTTACTCCCTAGCCCTGTACGTAATG
AATGTGAAGACGAGCCTGAAAACGCTTGATCTGCTGGCATTCACTGGTTT
ATAAGTACGTTAATATAGTTGTCTGCCTGATGGTTAGCACGCTGTTCTTT
AAGTCTGGATATTATATAGCACTGGCGTATACCAGTTTCTCTTCGGTTTC
TCATGCTCGCACGTTGCGACGAAACTGCTGCAGACAACTCCCGGCTGCGC
CCAGTGAGCATCACTACGATCGGTATGCATTCCACAGCATTGGACTACGC
GGGCGGAAAAGCGCAAACTACTTCCTGTTCATGATCGTGCCGGGAAGGCC
TGTTCGCT
UFO08767.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5484-RB | 1495 | CG5484-RB | 108..1222 | 9..1107 | 5035 | 97.8 | Plus |
| CG5484-RC | 1522 | CG5484-RC | 157..1249 | 31..1107 | 4925 | 97.7 | Plus |
| CG5484-RA | 1507 | CG5484-RA | 142..1234 | 31..1107 | 4925 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26718327..26718867 | 30..570 | 2705 | 100 | Plus |
| 3R | 32079331 | 3R | 26718920..26719303 | 568..951 | 1825 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:38:45 has no hits.
UFO08767.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:10 Download gff for
UFO08767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RB | 124..1245 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:49:33 Download gff for
UFO08767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RB | 101..1222 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:51 Download gff for
UFO08767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RB | 101..1222 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:51 Download gff for
UFO08767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26718328..26718866 | 31..569 | 100 | -> | Plus |
| 3R | 26718922..26719308 | 570..955 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:49:33 Download gff for
UFO08767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22544050..22544588 | 31..569 | 100 | -> | Plus |
| arm_3R | 22544644..22545030 | 570..955 | 99 | -> | Plus |
