UFO08769.5prime Sequence
1104 bp (1013 high quality bases) assembled on 2011-08-05
> UFO08769.5prime
CAGTCGACATGAAGGCCACCATCGATAAGGAGCTGCTGCCCATGAAGGCG
CACTACTTTCTCTTCAACGCCGGCACCGCTCCCGTCGTCCCCTTCATGCC
CACTCTGGCCGGCCAATTGGGCTACTCCCCCGCCGTTGTGGGCACCATGT
ACACTATCCTTCCCATCATCGGAATGCTGGCGAAGCCCCTCTTTGGATAC
ATTGCGGACCGGTACCATCGCCATCGACCCCTATTTCTGGGTGGCCAGGT
CCTCACGGGCATCGCCTTTTTCCTCATCATGTTCGTGCCGGGAATGGAGA
AGCCGTTGCCCAAGGTCGAGTTCCACTGCCACCAGGGTGTATCCGACATT
CCGAGATTCTGCTCGGAGTACGGCGAGTGCGTGGAGAGAAATCTTGAGCG
GTACTACGGGAACAGGACGTTGGAGTGTGAACTGAACTGCGAGGCACAGC
CCTTCATGTGGGACATAGTGTGTGAAGATTGGCTAAAGAACAACACGGAA
AACTGTGCCGCCAATCGAACCAATACCCAGATGGAATTCGGAGCCAGCAT
AACTATGCAAAAGATTGAGAATGATGGCAGCTGCATGTTCTTCATGATTC
CGCACGATCAAGGCCAGATTGCAGGCCAGAATGTCACGTTGTACTGCCCG
AAGGAGAAGGAGTACTTCAAATCCAATTGCACCATGGACTGTCGTGAGGA
CTATCTCAAGGAGCAGCTGGCGGAGAGTGCTGTGATTAACACGAGTAGTG
CCGTAACCATGCCGCAGTTTTGGCTGTTCTTTGGCCTGCTCATCTTCAGC
TGGATCGGCATGGCGGTGGTGGTCAGCATTGGTGACGCCATATGCTTTGG
CATCCTCGGCGATCGTCATCACCTGTACGCAAACAGCGCCTGTGCGGCTC
CCTTGGATGGGGAGTTTTTGCCCTCTTGGCCGGCCTCCTTGTGATCCACA
TGTCATTGGGTGAGGTGACCAGACTACACCGGCGTGTTCTGATGCTTGCT
TATCATGGGATTGATGTGTCCGCATCCTCCAGCTGAGCCACCGCCAACCA
TTGCGTCCAATTTGAAGAGTGTGGTCGAATTTTCTTCGGGCCTGGTTATT
TTCC
UFO08769.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sug-RF | 3349 | CG7334-RF | 599..1667 | 5..1061 | 4895 | 98 | Plus |
| Sug-RC | 2782 | CG7334-RC | 599..1667 | 5..1061 | 4895 | 98 | Plus |
| Sug-RE | 3343 | CG7334-RE | 599..1667 | 5..1061 | 4895 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11686724..11687551 | 211..1031 | 3710 | 97.9 | Plus |
| 3L | 28110227 | 3L | 11686069..11686211 | 72..214 | 715 | 100 | Plus |
| 3L | 28110227 | 3L | 11684578..11684648 | 5..75 | 340 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:38:50 has no hits.
UFO08769.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:11 Download gff for
UFO08769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sug-RC | 592..1663 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:50:03 Download gff for
UFO08769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sug-RE | 596..1667 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:52 Download gff for
UFO08769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sug-RE | 596..1667 | 1..1061 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:52 Download gff for
UFO08769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11684575..11684645 | 1..72 | 95 | -> | Plus |
| 3L | 11686070..11686208 | 73..211 | 100 | -> | Plus |
| 3L | 11686725..11687558 | 212..1037 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:50:03 Download gff for
UFO08769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11679170..11679308 | 73..211 | 100 | -> | Plus |
| arm_3L | 11677675..11677745 | 1..72 | 95 | -> | Plus |
| arm_3L | 11679825..11680658 | 212..1037 | 98 | | Plus |
