UFO08770.5prime Sequence
1093 bp (1009 high quality bases) assembled on 2011-08-05
> UFO08770.5prime
CAGTCGACATGTTTAAAAACAGAAAAATAATGAGTCGAATGCTAATTAAA
CCTGCTGCCGCCACAGTTTCGGCCGCTTTGCAGCAGCACCAGCGCCAGCA
GCAACAGTACGTTATTCGCCGCTGGAAATCGTTCCTGCACAACAACAGCA
ACAATGCCAATCGACGTGCGGCGAAATCAACGGCAACAGCAACGGTGACG
GCGGCAGCGACGTCGCAGCGCCATGGAACAAGCGGCGATTTCATTCAACC
GTTAGACGTCCGCCGTTCCTTTTCAACCAGCCACAAAATGCCGTCGTCGT
CGAAAGCGCTCACACTGGATAACATAAATCCCAACTTTATTGCCATGGAA
TATGCCGTTCGCGGTCCTCTGGTGATTCGTGCTGGGGAAATCGAGAAGGA
ACTGGAAAAGGGTGTCAAGAAGCCATTCTACCAGGTGATCCGTGCCAACA
TCGGTGATTGCCATGCGATGGGCCAGCAGCCCTTGACCTTCCTGCGACAG
CTGTTGGCGCTGACCTTCGAGACACGTCTGCTGGATTCACCCGATTATCC
CGAGGACGTCAAGAAGCGCGCCTGTGCCATTTTGAACGGCTGCCAGGGTC
AATCGGTGGGCTCGTACACCGACTCCGCCGGTCTGGAGGTGGTGCGTCGC
CAGGTTGCTCAGTACATCGAGAAAAGGGATGGCGGCATCGCCTCCAATTG
GCAGGACATCTATCTAACCGGCGGTGCCTCTCCCGGCATCAAGAGCATTC
TCTCCATGATCAACGCCGAGGTGGGATGCAAGGCGCCTGGTGTCATGGTG
CCCATTCCGCAGTACCCACTGTACTCGGCCACCATCTCTGATATGGCATG
ACCAAGTGGATTACTATCTGGAGGAGAGACCGGCTGGAGCCTGACAGGAA
GGAGCTGCACGGTCCTACGATGAGCCAAGATGTCTGCATCGCGTGCCCTG
TCGTGATCAATCGGGCAATCCCACGGACAGTACTGACCCGCGAGAACATC
GAGGTAGAATCATAGTCGCACACGATACAGTGCTGTGCTGCCGATGAGGT
GTTACAGACATGTTCTCAGAAGATTCAAGTTCTGTCCGTTCAG
UFO08770.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1640-RB | 2488 | CG1640-RB | 182..1244 | 9..1052 | 4650 | 97.1 | Plus |
| CG1640-RG | 2329 | CG1640-RG | 39..1085 | 25..1052 | 4570 | 97 | Plus |
| CG1640-RF | 2823 | CG1640-RF | 533..1579 | 25..1052 | 4570 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13378010..13378275 | 498..763 | 1330 | 100 | Plus |
| X | 23542271 | X | 13373863..13374103 | 25..265 | 1175 | 99.2 | Plus |
| X | 23542271 | X | 13374240..13374386 | 265..411 | 735 | 100 | Plus |
| X | 23542271 | X | 13378543..13378800 | 760..1004 | 575 | 91.5 | Plus |
| X | 23542271 | X | 13377856..13377947 | 409..500 | 445 | 98.9 | Plus |
Blast to na_te.dros performed 2014-11-26 23:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2445 | 81..211 | 154 | 62.3 | Plus |
UFO08770.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:11 Download gff for
UFO08770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1640-RB | 175..1259 | 2..1066 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:50:33 Download gff for
UFO08770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1640-RB | 175..1259 | 2..1066 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:54 Download gff for
UFO08770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1640-RB | 175..1259 | 2..1066 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:54 Download gff for
UFO08770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13373863..13374103 | 25..265 | 99 | -> | Plus |
| X | 13374241..13374385 | 266..410 | 100 | -> | Plus |
| X | 13377858..13377947 | 411..500 | 98 | -> | Plus |
| X | 13378013..13378275 | 501..763 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:50:33 Download gff for
UFO08770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13267896..13268136 | 25..265 | 99 | -> | Plus |
| arm_X | 13268274..13268418 | 266..410 | 100 | -> | Plus |
| arm_X | 13271891..13271980 | 411..500 | 98 | -> | Plus |
| arm_X | 13272046..13272308 | 501..763 | 100 | -> | Plus |
