UFO08772.5prime Sequence
1118 bp (978 high quality bases) assembled on 2011-08-05
> UFO08772.5prime
CAGTCGACATGGATAACAAGAGCGAGAAGGTTACGGTGAACAAGGAGGAG
CTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAGGAGGCGGG
CACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGAGAAGGGCG
TGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGGAGACCAAG
TACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTAGACAAGGG
CAAGGTCACGCTGCACCGCGATGCCAGCATACCAGGGGGCAATATTTTAC
TACTAATCGCACATCCAGAACGTATACGCACTGAGGTCCGCTGCGCCCGC
TGCAACGCCCACATGGGTCACGTCTTCGAGGATGGTCCGAAGCCGACCCG
CAAGCGCTACTGCATCAATTCCGCCTCCATTGAGTTCGTGAACGCGGATC
CCGCCACCTCGTCCCCGCCCGTGGCCACGCCCACCGCGGCGCCCATTGCC
CAGCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGCGAG
AGTTGTCCATATTGCCACGTTTAATCAAACTGGTGAACTCACCCAGGATT
GCTGAGACGAAAAAATATCTCATAACCCTTAGAATAGCAGTTCACGTACA
CGCCACATCTGCGATATATGTGTAGAAACTGCGGAAATCGTCTTGTATCC
CTTCGACGATGAAACGGTCAGTTTGCCTATGAACGGTACAGAGTAACATA
TCCATTACACAAGTCTCA
UFO08772.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RE | 1156 | CG6584-RE | 376..873 | 9..506 | 2490 | 100 | Plus |
| SelR-RB | 1041 | CG6584-RB | 261..758 | 9..506 | 2490 | 100 | Plus |
| SelR-RG | 2298 | CG6584-RG | 261..682 | 9..442 | 1405 | 89.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10863638..10863860 | 506..284 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 10866528..10866698 | 286..116 | 855 | 100 | Minus |
| 3R | 32079331 | 3R | 10866807..10866920 | 122..9 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:39:00 has no hits.
UFO08772.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:12 Download gff for
UFO08772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RE | 363..874 | 1..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:51:03 Download gff for
UFO08772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RB | 253..764 | 1..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:56 Download gff for
UFO08772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RB | 253..764 | 1..512 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:56 Download gff for
UFO08772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10863638..10863858 | 286..506 | 100 | <- | Minus |
| 3R | 10866529..10866693 | 121..285 | 100 | <- | Minus |
| 3R | 10866809..10866928 | 1..120 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:51:03 Download gff for
UFO08772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6689360..6689580 | 286..506 | 100 | <- | Minus |
| arm_3R | 6692251..6692415 | 121..285 | 100 | <- | Minus |
| arm_3R | 6692531..6692650 | 1..120 | 98 | | Minus |
