Clone UFO08773 Report

Search the DGRC for UFO08773

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:87
Well:73
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptcta-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO08773.5prime Sequence

1124 bp (1023 high quality bases) assembled on 2011-08-05

> UFO08773.5prime
CAGTCGACATGTCTGGCATTACATTGACCAAATTAACTCAAGAACGAATT
TCCATTCCAAACAACAATGTCATCACGAACGGCGTCGAAAACAACATAGA
TAGTGACACGCTTAGTGGTACTCTGACTCATCTTATGGAAGAGCATCGCA
CGCGGGTGGGAGCGGTAACTGGACCAGAAGCAGCGACCACGTCTACAGAC
GGCCTAATATCGAATGGAGCAGAGCGACTGCGACTTCAGGGCAGTCGGCT
TCAGACCTCGCGCTTTGCTTGCTTTCGATGTTGCGGAAATATTATCACAT
ATCTAGTAAGGCTGCGTAGTACCCCTGAGGAACTGGAGCAGCGCTACAAG
TCCAAAGAGATTGATAAGTTCCTGGAAAAAGAAAAACACACCTTTCGACG
TCAGGTTAAACTGCTGCTTTTAGGTGCTGGGGAATCTGGAAAATCAACTT
TTCTTAAACAAATGCGAATCATTCATGGAGTTAACTTTGATTATGAACTG
TTGCTGGAATACCAAAGTGTCATATACCAAAACGTTATAAGAGGTATGCA
AGTCTTGTTGGACGCTCGCGAAAAATTAAACATTGCGTGGGGAAGTGACG
GCAGAGAACAGGATGCTTATGATGCCAAATTAATGGAATGTAATTCACTA
GACGTACCCAAGTTTATGGAGTATGCACCACCAATAAGTCGACTGTGGCA
AGATCGTGGCATTAGAAGAGCTTTTGAAAGAAGACGTGAATTTCAAATTA
GCGATTCTGTAAGCTATTTCCTAGACGAGATTCAACGGCTAGCTACACCT
GATTATGTGCCAACGCACAAAGACATATTACATTGCCGGAAGGCAACTAA
AGGGTGTTTATGAGTTTTGTGTGAAAGTTCAGAACATTCCATTTGTGTTC
GTTGATGTTGGTGGACAGCGAACTCAACGTCAAAATGGACTAGATGTTTT
GATAGCTCCGTAACATCCATTATATTTCTCGTATCTAGTCGGAGTTCGAT
CAAGTTCTTGCGAGAAAAGAAAAACCATCGTCCTCGAAGAAGTCAAAGAA
TATATTTGATACAATTGTCCACAACCGCCAATTACAAATATCATATTTTA
TTTCTGAAACAACGACCTGGCTGA

UFO08773.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
cta-RB 2764 CG17678-RB 383..1488 9..1108 5145 98.3 Plus
cta-RA 2156 CG17678-RA 383..1488 9..1108 5145 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22982198..22982595 9..406 1990 100 Plus
2L 23513712 2L 22950077..22950284 749..542 1040 100 Minus
2L 23513712 2L 22990946..22991153 542..749 1040 100 Plus
2L 23513712 2L 22990752..22990895 403..546 720 100 Plus
2L 23513712 2L 22950335..22950478 546..403 705 99.3 Minus
2L 23513712 2L 22949891..22950022 882..750 600 98.5 Minus
2L 23513712 2L 22991208..22991339 750..882 600 98.5 Plus
2L 23513712 2L 22991390..22991526 878..1012 585 98.5 Plus
2L 23513712 2L 22949704..22949840 1012..878 585 98.5 Minus
Blast to na_te.dros performed on 2014-11-26 23:39:05 has no hits.

UFO08773.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:13 Download gff for UFO08773.5prime
Subject Subject Range Query Range Percent Splice Strand
cta-RA 392..1517 1..1122 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:51:31 Download gff for UFO08773.5prime
Subject Subject Range Query Range Percent Splice Strand
cta-RA 378..1503 1..1122 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:59 Download gff for UFO08773.5prime
Subject Subject Range Query Range Percent Splice Strand
cta-RA 378..1503 1..1122 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:59 Download gff for UFO08773.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22982193..22982593 1..404 99 -> Plus
2L 22990754..22990892 405..543 100 -> Plus
2L 22990948..22991153 544..749 100 -> Plus
2L 22991208..22991339 750..882 98 -> Plus
2L 22991395..22991534 883..1019 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:51:31 Download gff for UFO08773.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22874925..22875325 1..404 99 -> Plus
arm_2L 22883486..22883624 405..543 100 -> Plus
arm_2L 22883680..22883885 544..749 100 -> Plus
arm_2L 22883940..22884071 750..882 98 -> Plus
arm_2L 22884127..22884266 883..1019 96 -> Plus