UFO08773.5prime Sequence
1124 bp (1023 high quality bases) assembled on 2011-08-05
> UFO08773.5prime
CAGTCGACATGTCTGGCATTACATTGACCAAATTAACTCAAGAACGAATT
TCCATTCCAAACAACAATGTCATCACGAACGGCGTCGAAAACAACATAGA
TAGTGACACGCTTAGTGGTACTCTGACTCATCTTATGGAAGAGCATCGCA
CGCGGGTGGGAGCGGTAACTGGACCAGAAGCAGCGACCACGTCTACAGAC
GGCCTAATATCGAATGGAGCAGAGCGACTGCGACTTCAGGGCAGTCGGCT
TCAGACCTCGCGCTTTGCTTGCTTTCGATGTTGCGGAAATATTATCACAT
ATCTAGTAAGGCTGCGTAGTACCCCTGAGGAACTGGAGCAGCGCTACAAG
TCCAAAGAGATTGATAAGTTCCTGGAAAAAGAAAAACACACCTTTCGACG
TCAGGTTAAACTGCTGCTTTTAGGTGCTGGGGAATCTGGAAAATCAACTT
TTCTTAAACAAATGCGAATCATTCATGGAGTTAACTTTGATTATGAACTG
TTGCTGGAATACCAAAGTGTCATATACCAAAACGTTATAAGAGGTATGCA
AGTCTTGTTGGACGCTCGCGAAAAATTAAACATTGCGTGGGGAAGTGACG
GCAGAGAACAGGATGCTTATGATGCCAAATTAATGGAATGTAATTCACTA
GACGTACCCAAGTTTATGGAGTATGCACCACCAATAAGTCGACTGTGGCA
AGATCGTGGCATTAGAAGAGCTTTTGAAAGAAGACGTGAATTTCAAATTA
GCGATTCTGTAAGCTATTTCCTAGACGAGATTCAACGGCTAGCTACACCT
GATTATGTGCCAACGCACAAAGACATATTACATTGCCGGAAGGCAACTAA
AGGGTGTTTATGAGTTTTGTGTGAAAGTTCAGAACATTCCATTTGTGTTC
GTTGATGTTGGTGGACAGCGAACTCAACGTCAAAATGGACTAGATGTTTT
GATAGCTCCGTAACATCCATTATATTTCTCGTATCTAGTCGGAGTTCGAT
CAAGTTCTTGCGAGAAAAGAAAAACCATCGTCCTCGAAGAAGTCAAAGAA
TATATTTGATACAATTGTCCACAACCGCCAATTACAAATATCATATTTTA
TTTCTGAAACAACGACCTGGCTGA
UFO08773.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cta-RB | 2764 | CG17678-RB | 383..1488 | 9..1108 | 5145 | 98.3 | Plus |
cta-RA | 2156 | CG17678-RA | 383..1488 | 9..1108 | 5145 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22982198..22982595 | 9..406 | 1990 | 100 | Plus |
2L | 23513712 | 2L | 22950077..22950284 | 749..542 | 1040 | 100 | Minus |
2L | 23513712 | 2L | 22990946..22991153 | 542..749 | 1040 | 100 | Plus |
2L | 23513712 | 2L | 22990752..22990895 | 403..546 | 720 | 100 | Plus |
2L | 23513712 | 2L | 22950335..22950478 | 546..403 | 705 | 99.3 | Minus |
2L | 23513712 | 2L | 22949891..22950022 | 882..750 | 600 | 98.5 | Minus |
2L | 23513712 | 2L | 22991208..22991339 | 750..882 | 600 | 98.5 | Plus |
2L | 23513712 | 2L | 22991390..22991526 | 878..1012 | 585 | 98.5 | Plus |
2L | 23513712 | 2L | 22949704..22949840 | 1012..878 | 585 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:39:05 has no hits.
UFO08773.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:13 Download gff for
UFO08773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cta-RA | 392..1517 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:51:31 Download gff for
UFO08773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cta-RA | 378..1503 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:59 Download gff for
UFO08773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cta-RA | 378..1503 | 1..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:59 Download gff for
UFO08773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22982193..22982593 | 1..404 | 99 | -> | Plus |
2L | 22990754..22990892 | 405..543 | 100 | -> | Plus |
2L | 22990948..22991153 | 544..749 | 100 | -> | Plus |
2L | 22991208..22991339 | 750..882 | 98 | -> | Plus |
2L | 22991395..22991534 | 883..1019 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:51:31 Download gff for
UFO08773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22874925..22875325 | 1..404 | 99 | -> | Plus |
arm_2L | 22883486..22883624 | 405..543 | 100 | -> | Plus |
arm_2L | 22883680..22883885 | 544..749 | 100 | -> | Plus |
arm_2L | 22883940..22884071 | 750..882 | 98 | -> | Plus |
arm_2L | 22884127..22884266 | 883..1019 | 96 | -> | Plus |