UFO08774.5prime Sequence
1118 bp (991 high quality bases) assembled on 2011-08-05
> UFO08774.5prime
CAGTCGACATGCATCTGAACCATGCGACAGCCGCCACGGCAGCCATGGCC
AACTATCAGCACTACCAACTGCCAGCCTCCCATGGCGGTGGCGGCGGAGG
AGGAGGTGGCGGTGGCGGTGGAGGAGGGAGTAATGGTGGATCTGGACCGG
GTCCCAACTCGGGACAGCAGCAGCCCACCACACTGGCCAGCCTGCAACAG
AGTCCCTTTGCGCTGCATCAACTCACCGCCGTGCAGGCCATCCAGCACCC
TACCCACCAAGCCATGCTCCATCCACAGCACCCGCTGGTCCATTTGCTGG
ACATATCCACTACAACAGCGAACAGTGGCGGAGGAGGCGGGGGCAGCCAC
ACGCCCATTTCTCCTATGAAACAGGAGGTGCAGAGCGTGATTAGCGAGGA
GGAGGTGGTGGTGGACGATCCGCGTTTGATTAAACAGTGCCACGTGTGCA
AGAACAAGTTCCGGCAGCTGACCACGTTACGCAACCACATGAAGATCCAC
ACGGACGAGCGGCCCTACAAGTGCAAACACTGCGACAAGGCCTTCCGCCA
GATCTCGACGCTAACCAACCACGTGAAAATCCACACCGGAGAAAAGCCGT
TCACCTGCAACATCTGCGCCAAGGACTTTCGCCAGCAGAGCACCTTGATC
AATCACATCAAGACGCACAAGGCGGCGGAGTCCAGCACGCCAACTTCCCT
GTTGAACTATCAGCCGCAGACGGGCAGTGGCAAACACCGAAAGTCCCAGA
TGCACCAGGCCTACCAGCAGCAGCATCAGCGCGTCCAAATCTCAAAGACC
TTGTATTCCGGCAGCTACAGCTCGCCGGCGGCCGAGGAGCTGGTGAAGCC
GTTCCAGTGTAGCGTTTGCAGCGCCGCTTCCCGCAGCTGAGCACGCTGCA
CAACCACGAGCGGACCCACATCGATCCTAAGCCGTACAAGTGCGAAACGT
GTGACAAGTCCTTGAGCCAGCTGGCGACGCTGGCCAACACAAGAAGATCC
CATGGCGAACAAGGCGGTACACGTGTTCTACTGCCCCATGCAGTTCCCGC
AAGCCGAGCCACCCCTAACCACCCCCCTCAGTACGCCACACGCCATCATA
ATAGGCGCCCTGGAAGAC
UFO08774.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4360-RB | 3569 | CG4360-RB | 467..1551 | 8..1093 | 4940 | 97.5 | Plus |
| CG4360-RA | 3493 | CG4360-RA | 467..1551 | 8..1093 | 4940 | 97.5 | Plus |
| CG4360-RB | 3569 | CG4360-RB | 1391..1548 | 512..669 | 220 | 76.7 | Plus |
| CG4360-RA | 3493 | CG4360-RA | 1391..1548 | 512..669 | 220 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20326873..20327537 | 672..8 | 3250 | 99.2 | Minus |
| 3R | 32079331 | 3R | 20326421..20326799 | 1047..672 | 1550 | 95.8 | Minus |
| 3R | 32079331 | 3R | 20326382..20326539 | 669..512 | 220 | 75.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:39:10 has no hits.
UFO08774.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:13 Download gff for
UFO08774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4360-RB | 446..1506 | 8..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:51:59 Download gff for
UFO08774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4360-RA | 474..1534 | 8..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:59 Download gff for
UFO08774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4360-RA | 467..1527 | 8..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:59 Download gff for
UFO08774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20326403..20326798 | 673..1067 | 96 | <- | Minus |
| 3R | 20326873..20327537 | 8..672 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:51:59 Download gff for
UFO08774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16152125..16152520 | 673..1067 | 96 | <- | Minus |
| arm_3R | 16152595..16153259 | 8..672 | 99 | | Minus |
