UFO08776.5prime Sequence
1119 bp (1020 high quality bases) assembled on 2011-08-05
> UFO08776.5prime
CAGTCGACATGTCGGTAACATCTTCGATTGAGAAGCCAACAACCACAGCA
AGTGCAATTCAGCAACAGTATCAGCATCAGCAGCAGCAACAGCAACAGAA
GCCACAACAGCAGCAACAGCAGGATAAAAGCAGCACCATCGCAATCGCAG
CAGCAGCAGGACAGCAACAAAAGCGCAAATCCCTGAGTTCCAAGCGCTCG
TATTCGCTATCCTCGTCGAGCGCCTCCAGTTCTGGTTCCTTTGGGGCGAT
AAGGTCTGCGACATCGCCACTGGTCACCACCGCCGAGAGGGAGAAAGATA
AGGAGAAGAGCTCCTCCTCGGCCAGCAATAGCCACCATCAACATCATCAG
CTTCATCAACACCAACATCATCATCAGCAGCAGCAGTCGCAGCAGCAGCA
GCAATCCTTTTTGCCGTACTCATATTGCACCGATACCATAGCAGCAGTAC
ATCATCAACGACAGTCGTACGCGCTGGTCCAGAAGCCCCCATCGTTGCGC
TACCAGGGAAAGCCCCATCATCAGCTGAGCAACTTCTCGCCCACGATGAC
CTCCTCGGAACCCTCATCCCCATTGGCCGCCGATGGTTGCGGATCCGGAA
TCCTTAGCCCATCGGAGGTCGCCACCCATTGTTGCGCCAATGTCAAGGCC
AATATCACCACCCCATTGGCCACCACCACACAGAAAATGCACCGAACAAT
ACCATCTGATAAAATTAACCTACGCCTCATTCTTGTTAGTGGTAAAACAA
AAGAGTTTATTTTTAGCCCTTCAGATTCCGCAGGTGATATTGCACAAACA
GTATTTGATAATTGGCCAGAAGATTGGACCCACGAAACTGTGTCGAAAGC
CGAAATCTTGCGCTTAATTTATCAAGGTCGTTTTCTTCATTGCAATGTAA
CCTTAGAGCACTGGGACTTCCATTAGCAAAACGACTGTTATGCATTTAGT
GCCACGTGATAATTTGCCAGAGCCCAATTCACAGATCAAGACAAATAGTA
AAGGCGGTTCTGGACGATGCTGTCGACATGCTCTATTTGCAGCTTTCTAG
AACATCGTTGGCGCGCGGTCCAGTTACGTCTATCCTAATCCTATCCTAAT
CTTATCCACTAGGCTAGAT
UFO08776.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UBL3-RC | 2160 | CG9038-RC | 479..1522 | 4..1038 | 5000 | 99 | Plus |
| UBL3-RB | 1677 | CG9038-RB | 580..1623 | 4..1038 | 5000 | 99 | Plus |
| UBL3-RA | 2250 | CG9038-RA | 569..1612 | 4..1038 | 5000 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15851585..15852294 | 713..4 | 3535 | 99.9 | Minus |
| X | 23542271 | X | 15850548..15850712 | 983..821 | 725 | 98.8 | Minus |
| X | 23542271 | X | 15851088..15851196 | 822..714 | 545 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2487..2873 | 37..404 | 159 | 54.8 | Plus |
UFO08776.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:15 Download gff for
UFO08776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UBL3-RC | 466..1512 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:52:57 Download gff for
UFO08776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UBL3-RA | 566..1612 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:02 Download gff for
UFO08776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UBL3-RA | 566..1612 | 1..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:02 Download gff for
UFO08776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15851088..15851196 | 714..822 | 100 | <- | Minus |
| X | 15850546..15850710 | 823..984 | 98 | <- | Minus |
| X | 15851585..15852295 | 1..713 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:52:57 Download gff for
UFO08776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15744579..15744743 | 823..984 | 98 | <- | Minus |
| arm_X | 15745121..15745229 | 714..822 | 100 | <- | Minus |
| arm_X | 15745618..15746328 | 1..713 | 99 | | Minus |
