UFO08777.5prime Sequence
1107 bp (1017 high quality bases) assembled on 2011-08-05
> UFO08777.5prime
CAGTCGACATGGACAAGGTGAACGAACTCAAGGAAAAGGGTAACCAGGCG
CTCAGTGCCGAGAAGTTCGACGAGGCGGTGGCGGCGTACACAGAGGCCAT
CGCTCTGGACGACCAGAACCATGTGCTCTACAGCAACCGTTCGGCGGCAT
TCGCCAAGGCTGGAAAGTTCCAGGAGGCGCTAGAAGATGCGGAGAAGACC
ATTCAGCTTAATCCCACCTGGCCTAAGGGTTACTCACGCAAAGGAGCTGC
CGCTGCGGGTCTGAATGACTTTATGAAGGCCTTCGAAGCGTACAACGAGG
GTCTCAAGTACGATCCCACGAATGCTATACTCCTGCAAGGCCGCATGGAA
ACTACTGCCTCGGCTCTGAGCTTTATGCAATCGCAGGGGGATATACCCAT
GGACGTTGATCCCCAGCAGGCACGCAGCCGCAGGGCTCCATCGCCACCGC
CGGCGAAACCGGCTGAGCCCCCAAAGCCCGCTGAACCTCGGGTAGAGGAC
ATGACTGAGGAGCAGAAGAATAAGTACTTCGCGAGGAAGGAGAAGGAACT
GGGCAACGCCGCCTACAAGAAAAAGGACTTTGAAACGGCCCTAAAACACT
ACCACGCTGCCATTGAACACGATCCCACGGATATCACGTTCTATAACAAC
ATAGCTGCTGTTCACTTTGAGCGCAAGGAGTACGAGGAGTGCATCAAGCA
GTGCGAGAAGGGCATTGAGGTGGGGCGCGAAAGCCGCGCCGACTTTAAGC
TGATAGCTAAGTCCTTTGCTCGCATCGGTAACACCTATCGTAAGCTAGAG
AACTACAAGCAGGCGAAGGTTTACTATGAGAAGGCCATGTCCGAGCATCG
CACCCCTGAGATCAAGACCTCGCTGAGCGAGGTGAAGCCAAATCAAGGAG
AGAGCGAATGGCCTACATCAATCCGGAGAAGGCGAGGAGAGAAGAGCAGG
CAACCTTTTCTTTAAGAAGGGGACTACAGCACCGCTGTAAGCACTACACC
GAGGCCATCAGCGCAATCGATGATCCCAACTTCTTATAGTAACCGCGCCG
CTGCTAACCAAGCTGCGCCTTGTATCTTGGGCTTAGACCTGCCACCTTGC
ATCAAGC
UFO08777.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hop-RA | 2023 | CG2720-RA | 151..1267 | 9..1107 | 4960 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 295703..296466 | 300..1051 | 3150 | 97.8 | Plus |
| 2L | 23513712 | 2L | 295344..295630 | 16..302 | 1435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:39:24 has no hits.
UFO08777.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:15 Download gff for
UFO08777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hop-RA | 156..1280 | 1..1107 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:53:24 Download gff for
UFO08777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hop-RA | 143..1267 | 1..1107 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:05 Download gff for
UFO08777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hop-RA | 143..1267 | 1..1107 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:05 Download gff for
UFO08777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 295344..295628 | 16..300 | 100 | -> | Plus |
| 2L | 295704..296478 | 301..1061 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:53:24 Download gff for
UFO08777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 295344..295628 | 16..300 | 100 | -> | Plus |
| arm_2L | 295704..296478 | 301..1061 | 97 | -> | Plus |
