UFO08779.5prime Sequence
1115 bp (1019 high quality bases) assembled on 2011-08-05
> UFO08779.5prime
CAGTCGACATGAACATGAAGCCCGACATCCTAGCGCTCTGCATCCTGGCT
ACCACGATCCTGTGCAGCAGGACGCGTCACGTCGCCGGCTTCCTGACTGC
ACAGTCCACCGCCAGCGGAGGAGCAGGCGGAGCAAACGGTGCCAAAGTGG
GTGACCATCAGGGCGTGGCGTCCGTACCACAACGTCTTCATTTGCCCGTT
CTAGCGGTCGGGGGCGGACCCGTTCGCCAAGGACCCGCTCTGCCCGGCGA
TGTCCTGGATGCCCAGGAACGAGCTGTTTACGATCCCGGCGATGAATTAC
TCCGCGCCCAGGAGCTCGGATTGGCAGTGGTTCCTCAAGGTCCCGACTAC
GCGGATGCGGTGTACAACGAACTCGAGCTGGCCAGCAAGTTCGAGGTGCT
CAAGAAGATGGAGGAGGATTTGCGTGCCGAGCAGGAGCTGGTGGACAAAT
CCGCTTTGCTCATGAAAATGCTGGAGGATCCCTCATTGGAAACCTTGCCC
TTGGTCTACGTGGAGGAGGAGGAGCCGGAGGCTGTGATTCCTTCCGGCGG
AGCCGAGGACTACGCCGACTTGGAGAACGCCGTTCAGGATTTGGTTTTGG
GCCAGAGCAAATCCAAGCGTTCGCGCTACTATCGAAGGTATCCATGGAAG
CGTCACAACAAGAATCGCGGTTCTTACATGAATTCTATCAACAGCAACTA
TGAACCGGAATTGCGTTATGCCTGCACACCTAGTAAGGAGGATATATTCA
AGCTGCTGGTCAATCTGCACGAGAATCGCAAGGGCAATCACAGCAAGACG
GTTAACTTCTGCAATCGAAAGCGTCCGGCCAAGGCGGTCTTCACCAACAT
TAGTTCCTGGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAGTGGTCATAATCATAATCATATCATATCATATCACACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGATTCTCACCAATAAAAAACGCCCGGC
GCCACCGAGCGTTCTGAACATTCCGGATGGAGTTCTGAGGTCATTACTGG
ATTTATCAACGGAGTCAGCCGAGCTCGAATCATTACGCCGGCCTGCCACT
CATCTGCAGATATCT
UFO08779.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7191-RA | 1643 | CG7191-RA | 149..1001 | 9..860 | 4240 | 99.9 | Plus |
| CG7191-RB | 1619 | CG7191-RB | 149..977 | 9..860 | 3870 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7771320..7771605 | 9..294 | 1430 | 100 | Plus |
| 2L | 23513712 | 2L | 7773463..7773658 | 475..670 | 980 | 100 | Plus |
| 2L | 23513712 | 2L | 7773068..7773251 | 294..477 | 920 | 100 | Plus |
| 2L | 23513712 | 2L | 7774200..7774383 | 670..853 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:39:33 has no hits.
UFO08779.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:16 Download gff for
UFO08779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7191-RA | 128..986 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:54:23 Download gff for
UFO08779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7191-RA | 149..1007 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:09 Download gff for
UFO08779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7191-RA | 149..1007 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:09 Download gff for
UFO08779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7771320..7771605 | 9..294 | 100 | -> | Plus |
| 2L | 7773069..7773250 | 295..476 | 100 | -> | Plus |
| 2L | 7773465..7773658 | 477..670 | 100 | -> | Plus |
| 2L | 7774201..7774397 | 671..866 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:54:23 Download gff for
UFO08779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7771320..7771605 | 9..294 | 100 | -> | Plus |
| arm_2L | 7773069..7773250 | 295..476 | 100 | -> | Plus |
| arm_2L | 7773465..7773658 | 477..670 | 100 | -> | Plus |
| arm_2L | 7774201..7774397 | 671..866 | 98 | == | Plus |
