UFO08780.5prime Sequence
1095 bp (999 high quality bases) assembled on 2011-08-05
> UFO08780.5prime
CAGTCGACATGGTAAATTTGCCTATTTTCCAGAAACAAATTTGGACAGTT
GTTGAATTTGCAGAGACAAAATGTTCAGCCAGGCGGCGTGGCTGTCCTTC
AGGACCAGCAGCGATTTATTTACTATCTGATCACCAAGAAATCCAGCTGG
GGAAAGCCCACCTACGAACTTCTCCAGAGTTCCTTGATCGCCATGCGAAA
ACACATGGTATGTTTATGTATCTTCTAGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTG
CCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAA
ATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATAT
TCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCC
ACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTC
ACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAAC
AAGGGTGAACACTATCCCATATCACCAGCTCACGTCTTTCATTGCCATAC
GAATTCAGATGAGCATTCATCAGCGGGCAGATGTGAATAACGCGATAAAC
TTGTGCTTATTTTTCTTTACGTCTTTAAAAGCGTATATCAGCTGACGGTC
TGTTATAGTACATGAGCACTGACTGAATGCCTCAATGTTCTTACGATGCA
TGGATATATCAACGGTGAAATCAAGGAATTTTTTCAATTTTAGCT
UFO08780.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34261-RB | 796 | CG34261-RB | 187..362 | 32..207 | 880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21197047..21197265 | 9..227 | 1095 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 796..863 | 123 | 68.1 | Plus |
UFO08780.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:17 Download gff for
UFO08780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34261-RA | 201..423 | 9..232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:54:53 Download gff for
UFO08780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34261-RB | 183..362 | 26..207 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:09 Download gff for
UFO08780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34261-RB | 183..362 | 26..207 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 00:45:09 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 14:54:53 has no hits.
