UFO08782.5prime Sequence
1095 bp (1012 high quality bases) assembled on 2011-08-05
> UFO08782.5prime
CAGTCGACATGGGCTTCCTCACAGTATTAAAAAAGATGCGACAGAAGGAA
AGGGAAATGCGCATATTACTGCTAGGTCTGGATAATGCCGGCAAGACGAC
AATCCTGAAGCGCTTTAATGGCGAACCCATAGACACCATCTCACCCACAC
TGGGATTCAATATTAAAACCTTGGAGCACAACGGCTACACCCTGAATATG
TGGGATGTCGGTGGCCAGAAGTCTCTGCGATCCTACTGGAGAAACTACTT
CGAGTCCACTGATGGTCTGGTCTGGGTGGTGGATAGCGCTGACAGGATGC
GCCTAGAGTCCTGCGGCCAGGAGCTGCAAGTTCTGCTCCAGGAAGAGCGA
TTAGCTGGAGCCACACTCCTAGTTCTCTGCAACAAACAGGATCTACCGGG
AGCCCTCTCATCCAACGAAATTAAAGAGATACTACACCTAGAGGATATCA
CCACACATCATTGGCTGGTGGCCGGAGTTAGTGCAGTGACTGGCGAGAAA
CTGCTTAGCTCCATGGACTGGTTGATCGCCGATATAGCTAAGCGTATATT
CACTTTGGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGCG
AGAGTTGTCCATATTGCCACGTTTAAATCAACTGTGAACTCACCCAGGAT
TGCTGAACGAAAACATTATTCTCATAACCCTTAGGAATAGCAGCTTCACG
GTACCCGCCATCTTGCCAATTATTGTGTAACTGCCGAAATTGCTG
UFO08782.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arl2-RA | 656 | CG7435-RA | 79..631 | 8..560 | 2765 | 100 | Plus |
| CG9601-RA | 1856 | CG9601-RA | 1670..1803 | 560..427 | 670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8341303..8341657 | 74..428 | 1775 | 100 | Plus |
| 3R | 32079331 | 3R | 8341714..8341847 | 427..560 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 8341178..8341243 | 8..73 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:39:42 has no hits.
UFO08782.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:18 Download gff for
UFO08782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf84F-RA | 73..634 | 1..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:55:22 Download gff for
UFO08782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arl2-RA | 73..634 | 1..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:11 Download gff for
UFO08782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arl2-RA | 73..634 | 1..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:11 Download gff for
UFO08782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8341716..8341850 | 429..564 | 98 | == | Plus |
| 3R | 8341172..8341243 | 1..73 | 95 | -> | Plus |
| 3R | 8341303..8341657 | 74..428 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:55:22 Download gff for
UFO08782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4166894..4166965 | 1..73 | 95 | -> | Plus |
| arm_3R | 4167025..4167379 | 74..428 | 100 | -> | Plus |
| arm_3R | 4167438..4167572 | 429..564 | 98 | == | Plus |
