UFO08786.5prime Sequence
1108 bp (1009 high quality bases) assembled on 2011-08-05
> UFO08786.5prime
CAGTCGACATGTTCGTCAAAGTGAAATTAGATGCCGAGGGAAACACAAGT
GTGATGCCGGAAATGTTCGAGCTCCACAATAATGCGACCATTGGTGAATT
GAAGCAAAAACTGGAGGTAAAAGTAGGTCTTCCCTTGGCTCGCCTAAACG
TACAGAGTTTTCACAAGTCTCTGGAAAACGATGAGTTTATTACAAATTTG
CTCAGAATTCCGGATAAAAGCGATTATACTTATCCGTCGACAACGCTTAA
TGGTACAGCCTTTTCGCTGTACCACGAAAATTCCTTTGTAGGATTTCTCC
AATTCTATACAATTCCAGAGGGCAAGAGCCAACTGGATTTCCTTAACATG
CCGAAGAGCTCTATGCTTCTGCCAGTGGACAGGCTTCCGCAGTTTTGCGA
GGCTTCGAACTCGCAAGATTCCTCCGCATCCAGTGCGTCGAACCAGACGA
ACGCCAGCTTCGAATCCGCAAGCACGAGCGCCAGCTCCGTAGCGCGAAAG
ACGAGAGTGTGCGCCTCCGATGAGGAATCGGCTGCCAAAAGAATACGAAG
CAACCAAGAGAACAGCGTGGTCAAGGTGGTTCCGCAGCAGAATCTGCTCG
CGGACAAACGAGCCGGCAGCATGGCTTCCATATTTGGTTCGAAGATCCAC
CTGATGAACTGCTGCAAGACGGAGACCAGCCGCACAAGCTGCTCAGTGGA
GCAGGCCGAGGAGTGCAAGGAGAGGAAGAAGGACTGCTGCACGCCAAAGA
ATTGTCGCAAGAGGGATACTCGGCCGCCGTATGCGAACACAATGCCCGAG
AACCGACGTTACGCCTTGGTGATAACTAACCAGAGTTCGTGCTCGGATGG
TGTGACACTATCGCCCTAATGGAGCACTTTCATTCAATATTCGAGGACAG
TGATCGAGCGTCAGCGATCTCAATTTTAGTGAGTGTGCCTCAACGCAGAC
ATTCGACTGCACATGCTGGTGTCTGCGAGATAACGAAACGCCCATGGTCA
TCGAGCAGTCGATGTGTGGAGCGCCACTCCTGCAGCCTTCATAGTCTCGA
TCTAGGAGGACGACTTGTCTGCTTATCAGTCGGAATAGTCGCCCTTCTGT
GTGTATCT
UFO08786.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7208-RB | 1563 | CG7208-RB | 93..1168 | 9..1064 | 4885 | 98 | Plus |
| CG7208-RA | 1607 | CG7208-RA | 181..1212 | 53..1064 | 4665 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18184658..18185146 | 541..53 | 2445 | 100 | Minus |
| 3R | 32079331 | 3R | 18184140..18184595 | 990..540 | 2030 | 98.9 | Minus |
| 3R | 32079331 | 3R | 18185261..18185305 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:39:55 has no hits.
UFO08786.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:20 Download gff for
UFO08786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7208-RB | 81..1099 | 1..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:56:53 Download gff for
UFO08786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7208-RB | 87..1105 | 1..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:17 Download gff for
UFO08786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7208-RB | 87..1105 | 1..1012 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:17 Download gff for
UFO08786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18184172..18184593 | 542..961 | 99 | <- | Minus |
| 3R | 18184658..18185145 | 54..541 | 100 | <- | Minus |
| 3R | 18185261..18185311 | 1..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:56:53 Download gff for
UFO08786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14009894..14010315 | 542..961 | 99 | <- | Minus |
| arm_3R | 14010380..14010867 | 54..541 | 100 | <- | Minus |
| arm_3R | 14010983..14011033 | 1..53 | 92 | | Minus |
