UFO08787.5prime Sequence
1121 bp (1016 high quality bases) assembled on 2011-08-05
> UFO08787.5prime
CAGTCGACATGACAGAGAAAGTGACTAAACTGGCGCTGGCCAGTCGCCTT
ATCGTCCTCCTGGTACAATTGGTCGCCAACGGAGCCCTGCCAGAGCACAA
ACCAGATGTATTCCGGATGCCGGTTTCGTCAGATCAGAATGCCTCCTGGA
TAGACAAGGTGATTAAGCGCTGCTTGGGAGGATTACGGCACTGGGATGGA
GAATACTTTCTGCATATAGCCGAGAATCTGTACAGCTACGAAAACACGTT
GGCCTTCTATCCACTATATCCGGTTGTCGTGCGTCACGTGGGACAGGCCG
TGGAGGCCATCGGGATCTCCTTATCACAGGAATCTATCCTGCTGGTGGTG
GCTGTCGCCCTGAACTTCTGGCTCTTCTGCGAGTCAGCTAATTTGCTGTT
TCAGCTCACCCAAGTATTGTTCAACGATTTAAACAAGAGCTGGAATGCGG
CCCTCATCTACTGCTTTAATCCGGCAACCATTTTCTTCACCGCCGCCTAC
TCAGAGACCTTTTTCGCCTACTCCAGCCTTCATCTGATGCTGGAGTGCTC
GAAGCCGACGGGTAGCTTCCGATATCTGCGTTTGGGAACCGCCTTAGCCG
CCTGTTTACTGTGCCGCTCAAATGGATTAATCACCTTGGGATACCCGCTC
TACTTCTTCGGACGCCAACTGCTACTCAAGAACAAGGAGCCCAACACCTG
CATGCAGCTGACACAAATGACGCTGACCATTCTGGGAGCCATTGGGATAC
TGCACACCTACTATTTCTACATATACAGGCTATACTGTCTGCCGAACACA
AGGCCAAACCATCCGCAGCACATTGTGGACTACGCAGTGGAACGGAAGTA
CCTATTGTCTGGCCAGGCTCTGAAGGATCACCTTGGTGCCAGTACACGTT
GCCGTTCCCTACACTTACGTGCAGTCGCACTACTGGGATGTGGGCTTCCT
GCGAAACTACAGTGGAAACAGCTGCCAACTTCTTGCTGGCCTGCCCATGC
TGGAGTTCATGCACTGGCACTGCTACGACTACATGCAGCATTTGGCAAAG
CGTCTGGGTCAATTGACGCCTCCTGCTTCAAGGGACTGATAGGAACCACA
CACATTTCCTTCCGGCTGCAG
UFO08787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-V-RC | 1780 | CG44239-RC | 225..1348 | 9..1120 | 5140 | 98 | Plus |
| PIG-V-RB | 1851 | CG44239-RB | 296..1419 | 9..1120 | 5140 | 98 | Plus |
| PIG-V-RA | 1791 | CG44239-RA | 236..1359 | 9..1120 | 5140 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16955753..16956795 | 9..1046 | 4905 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:40:00 has no hits.
UFO08787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:21 Download gff for
UFO08787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veg-RB | 281..1364 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:57:21 Download gff for
UFO08787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-V-RA | 227..1310 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:19 Download gff for
UFO08787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-V-RA | 227..1310 | 1..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:19 Download gff for
UFO08787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16955744..16956858 | 1..1103 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:57:21 Download gff for
UFO08787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12843249..12844363 | 1..1103 | 97 | <- | Plus |
