UFO08790.5prime Sequence
1094 bp (1014 high quality bases) assembled on 2011-08-05
> UFO08790.5prime
CAGTCGACATGGCCAATTTTGACGATACGTTGCAACGCGCCCGCCTTGCC
TTTTCCAGTGGAAAGACCAGGAATGTCAGCTTTCGACGCAAGCAGCTGGA
GAATTTGCTGCGTTGCTATGAGGAGCACGAGAACGAGATCATCAGCGCCT
TGGAGGCGGATCTGCGACGTCCCAAGCAGGAGAGCCTCATCGTGGAAACG
GAATTCATGAAGAACGACATCAGGCACATCCTATTCCAGCTCGACGAGTG
GGTGCAGTCGGAGAAGCCGCCCAAGTCGTTTGTGAACATGATGGACGACG
TCCAGATCTACAATGACCCCTTCGGAGTGGTTCTGGTGATCGGCGCCTGG
AACTACCCGCTGCAGCTGCTGCTCGTGCCAGTGGCTTCCGCCATCGCCGC
CGGAAACTGTGTGGTGATCAAGCCCAGCGAGATTGCCGCCAACTGCGCCA
AGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGATTGCTATCCA
GTTGTCTGCGGTGGACCCAGCGAAACGGCGGAGCTGCTCAACCAGCGTTT
CGACTACATCTTCTACACGGGCTCCACGCGCGTAGGCAAGATTATCCACG
CCGCGGCCAACAAGTACTTGACCCCCACCACCTTGGAGCTGGGTGGCAAA
AGCCCCTGCTACATTGACAAATCTGTGGACATGCGCACTGCGGTCAAGCG
CATCCTGTGGGGCAAGCTGATTAACTGCGGACAGACCTGCATCGCTCCGG
ACTACATCCTCTGCTCCAAGGAGGTGCAGGAGAAGTTCATCGTGGAGGCC
AAGGACGTGCTGAAAGGATGGTACGGCGAGAATATCCAGAGCAGTCCGGA
TCTAAGCCGTGTGATCAACGCCAACAACTTCCAGCGCCTTCTTGGCCTAA
TGAAGTCCCGGCCGCGTGTCCGTCGGAGGTAACTACGATGCCAGCGAGCG
TTTCATCGAACCCACCATCTTGGTGGACGTGAGAGACGATCCCATCATGG
AGGAGGAGATCTTCGCCCATCTGCCCATCTCCAATGGTGGGAAGAGTGCC
TACGATGCATCAGGTCATCAATGCCAGAGAAAGCGCTGATAACT
UFO08790.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aldh-III-RU | 2115 | CG11140-RU | 193..1270 | 9..1082 | 5065 | 98.4 | Plus |
| Aldh-III-RQ | 2923 | CG11140-RQ | 1180..2257 | 9..1082 | 5065 | 98.4 | Plus |
| Aldh-III-RS | 2233 | CG11140-RS | 320..1397 | 9..1082 | 5065 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7469614..7469847 | 884..651 | 1140 | 99.1 | Minus |
| 2R | 25286936 | 2R | 7470393..7470617 | 489..265 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 7470702..7470883 | 266..85 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 7469909..7470072 | 652..489 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 7469424..7469557 | 1015..884 | 500 | 94.8 | Minus |
| 2R | 25286936 | 2R | 7473288..7473346 | 85..27 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:40:10 has no hits.
UFO08790.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:22 Download gff for
UFO08790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RO | 1169..2266 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:58:18 Download gff for
UFO08790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RS | 312..1409 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:24 Download gff for
UFO08790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RS | 312..1409 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:24 Download gff for
UFO08790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7469615..7469845 | 653..883 | 99 | <- | Minus |
| 2R | 7469909..7470072 | 489..652 | 100 | <- | Minus |
| 2R | 7470394..7470615 | 267..488 | 100 | <- | Minus |
| 2R | 7470702..7470882 | 86..266 | 100 | <- | Minus |
| 2R | 7473288..7473346 | 27..85 | 100 | <- | Minus |
| 2R | 7469354..7469557 | 884..1084 | 91 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:58:18 Download gff for
UFO08790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3356859..3357062 | 884..1084 | 91 | <- | Minus |
| arm_2R | 3357120..3357350 | 653..883 | 99 | <- | Minus |
| arm_2R | 3357414..3357577 | 489..652 | 100 | <- | Minus |
| arm_2R | 3357899..3358120 | 267..488 | 100 | <- | Minus |
| arm_2R | 3358207..3358387 | 86..266 | 100 | <- | Minus |
| arm_2R | 3360793..3360851 | 27..85 | 100 | <- | Minus |
