UFO08792.5prime Sequence
1129 bp (1010 high quality bases) assembled on 2011-08-05
> UFO08792.5prime
CAGTCGACATGAACACACCAGTGATTTCGGTGGTGCCAAAGGAATTCAGT
CTCAGAAATCACCAATCCACCAACCCAGCCACCAGCATGAAGTTCTTCGT
TGCCACCGCCTGCATCCTGCTCCTGGCAGCAGGTATCTCTGCCGATCCCG
TCAAGGCCGCTGAGGAGCAGCCCGGCGCCTTTGCCCAGTGCCTCGAGTCC
GACTCCATCTCGTGCCTGCAGCTCACGCTCTTCCGCAAGGCCAAGTCCGT
GTTCGATAACCCTCAGATCGAGCTTTTCGGTGGTGTTTCTCTGGTGAAGT
CCAATGAAGGTCGTCAGGGCAAGTCCCTGGACAACTCCCTGGCTGTTGAG
GCCGCTCCCACCGTGGAGGCCCGCACCGCCGAGATGGGCAACTACTTCAT
GGACAACGCCAAGAGCTTCTTCGCTGAACGCTCCCTGAACTTCAACTTCG
CTAACGCCGCTCGCAGCGTGGCCCGCGCCATTCCCGATGACATCAAGGCT
GATCTCCGCGAGCTGGTTGTTGAGTCCCGTACCCGCAAGAAGAAGCTGCT
GAAGAAGTTCCTGCCCATCCTGCTGGGAGTTGGTGCTAAGATCGCCGTCC
TTGGAGTCGGCTCCATCTTCGGACTACTGTTCCTGGCCAAGAAGGCACTG
GTTGTGTCTGTTATCGCCTTCTTCCTGGCTCTGGCTGCTGGTGCTTCCAG
CGGACTGGGACGCATCGGTGGATCCGGAGGCGGCGGCGGTCTGCTCGGCG
GTCTGGGAGGTCTCTTCGGCGGCAAGAACGCCGGTGGATCGTCGGCTGCC
AGCACCGGTGGATGGTCCTCGGGTGGTGGTGCCTCCAGCGCCGGATGGTC
CTCTGGCGGCAGCTCGGGTTGGGACACCCATGGTGCCTACAGCTCGCTGT
GACCAGACCATCGCCTACCAGGGATACAAGCAGGCCGCCGGGCAGCTTTC
TAGACATTCGTTTGGCGCGCGGGCCCAGGTTAGTGGTCATAATCATATCA
ATTCATATCATATCCCACTAGCCTAGGAGATCTGGTCATGACTAGTGCTG
ATTCCTCACAATATAAACGCCAGCGCCACGGACGTCTGAACAATCCGAAT
GAATCTGAGGTCTACTGAATCTATCACAG
UFO08792.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi6-RB | 1846 | CG1151-RB | 29..964 | 9..941 | 4590 | 99.6 | Plus |
| Osi6-RA | 1545 | CG1151-RA | 29..964 | 9..941 | 4590 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6235582..6236293 | 227..936 | 3445 | 99.6 | Plus |
| 3R | 32079331 | 3R | 6234736..6234954 | 9..227 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:40:18 has no hits.
UFO08792.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:24 Download gff for
UFO08792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi6-RA | 21..963 | 1..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:59:14 Download gff for
UFO08792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi6-RA | 22..964 | 1..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:27 Download gff for
UFO08792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi6-RA | 22..964 | 1..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:27 Download gff for
UFO08792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6234729..6234954 | 1..227 | 99 | -> | Plus |
| 3R | 6235583..6236299 | 228..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:59:14 Download gff for
UFO08792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2060451..2060676 | 1..227 | 99 | -> | Plus |
| arm_3R | 2061305..2062021 | 228..941 | 99 | | Plus |
