UFO08793.5prime Sequence
1119 bp (1022 high quality bases) assembled on 2011-08-05
> UFO08793.5prime
CAGTCGACATGAGTGTCTGTGAGAGCAAAGCCGTTGTGCAACAGCAACTG
CAGCAGCACTTGCAGCAACAGGCAGCCGCAGCAGTTGTTGCGGTCGCGCA
ACAGCAGCAGGCTCAAGCCCAAGCCCAGGCTCAGGCTCAGGCACAGCAGC
AGCAACAGGCGCCGCAGGTGGTGGTCCCCATGACCCCGCAGCACTTGACC
CCACAGCAGCAGCAGCAGAGCACACAGAGCATCGCCGACTATCTGGCCCA
GTTGCTCAAGGACCGCAAGCAACTGGCCGCCTTCCCCAACGTCTTCACCC
ACGTCGAACGCCTGCTGGACGAAGAAATTGCACGCGTGCGCGCCTCACTG
TTCCAGATCAATGGGGTCAAGAAGGAGCCGCTCACTCTGCCCGAACCCGA
GGGCTCTGTGGTGACGATGAACGAGAAGGTTTATGTGCCAGTCCGCGAGC
ATCCAGATTTCAACTTTGTCGGTCGCATTTTGGGACCCCGTGGCATGACC
GCCAAGCAATTGGAACAGGAGACCGGCTGCAAGATTATGGTCCGAGGCAA
GGGTTCCATGCGCGACAAGAAGAAGGAGGACGCCAACCGTGGCAAGCCTA
ACTGGGAGCATCTGTCCGATGACCTGCATGTCCTGATAACCGTCGAGGAC
ACCGAGAACCGTGCCACAGTGAAGTTGGCCCAGGCCGTCGCCGAAGTACA
GAAGTTGCTCGTGCCGCAAGCCGAAGGCGAAGATGAGCTAAAGAAACGTC
AACTCATGGAATTGGCGATTATTAATGGCACTTATAGGGACACAACAGCG
AAATCTGTCGCAGTGTGCGATGAGGAGTGGCGCCGCCTGGTTTGCCGCCT
CTGATAGCCGCCTGCTGACATCCACCGGCCTGCCCGGGCCTTGCCGCCCA
GATCCGTGCACCCGCCGCCGCCCCCGCTTGGCGCCCATTGATCCTGATTC
CCGGATGACCGTCCCCACAACGGGCGGCAGCATTTTGTTCCGCCCAGGCC
GCTCCGACAGCCGCCTTCGACCAGACGTCATTGTAATGAATCTTTCGCAC
GTACGATTAGCGACTACCGCCGCCCTTAGCTGCAATCTTTGCTCTCAGGA
AATGCTGAATCATCGTTAG
UFO08793.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| how-RB | 1759 | CG10293-RB | 323..1422 | 9..1108 | 4915 | 97.4 | Plus |
| how-RC | 2181 | CG10293-RC | 323..1422 | 9..1108 | 4915 | 97.4 | Plus |
| how-RD | 3884 | CG10293-RD | 323..1422 | 9..1108 | 4915 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22043064..22043379 | 9..324 | 1580 | 100 | Plus |
| 3R | 32079331 | 3R | 22071734..22071949 | 809..1026 | 725 | 95 | Plus |
| 3R | 32079331 | 3R | 22070805..22070947 | 574..716 | 715 | 100 | Plus |
| 3R | 32079331 | 3R | 22062723..22062858 | 323..458 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 22069111..22069228 | 459..576 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 22071332..22071429 | 716..813 | 490 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6858 | 73..217 | 157 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2276..2467 | 24..217 | 153 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2502 | 98..299 | 133 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6827 | 132..233 | 132 | 62.3 | Plus |
UFO08793.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:24 Download gff for
UFO08793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| how-RC | 315..1337 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:59:44 Download gff for
UFO08793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| how-RD | 316..1338 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:30 Download gff for
UFO08793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| how-RD | 316..1338 | 1..1026 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:30 Download gff for
UFO08793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22069111..22069227 | 459..575 | 100 | -> | Plus |
| 3R | 22070807..22070947 | 576..716 | 100 | -> | Plus |
| 3R | 22071333..22071429 | 717..813 | 100 | -> | Plus |
| 3R | 22071739..22071949 | 814..1026 | 95 | | Plus |
| 3R | 22043057..22043379 | 1..324 | 98 | -> | Plus |
| 3R | 22062725..22062858 | 325..458 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:59:44 Download gff for
UFO08793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17868779..17869101 | 1..324 | 98 | -> | Plus |
| arm_3R | 17888447..17888580 | 325..458 | 100 | -> | Plus |
| arm_3R | 17894833..17894949 | 459..575 | 100 | -> | Plus |
| arm_3R | 17896529..17896669 | 576..716 | 100 | -> | Plus |
| arm_3R | 17897055..17897151 | 717..813 | 100 | -> | Plus |
| arm_3R | 17897461..17897671 | 814..1026 | 95 | | Plus |
