UFO08794.5prime Sequence
946 bp (933 high quality bases) assembled on 2011-08-05
> UFO08794.5prime
CAGTCGACATGGTCACATACAATACTCTAATACAGAACGAAAAGAATGAA
AATGTGGTCGCCCCGATAAGCCGGCCATTCGCCAGAAAGAGGAGGACTGA
GATTCGCCGCCTGCAGTCCAACAGGCGGTTGAATAAAAAGGTGTGCAAAC
ACCATTTGGACATTGCCCATTGTACCCAGAAGAAGGCTCCATGGCGGAAT
TGGGCATACCTCATTCTCGCCCTCGCCGCAGGAATTGGCATGTTATTGCA
GTTCACCGACAAGTTGTCCACGGTCAGCGGATTCCTGGAAAGCTACAAAA
ACCAGTACCACTCGATCGTCCACAACCAGGACAACTACTGCAATCCCTCC
CGACGGCTGGGCGACATGGTCCTGCACGCCCGCCACCAGGTACTCAACCA
GGATCTTGCATTGAACCAGCTAGAACTTTCACTGGACAACACCACCAATG
AGGCAATCGTCTTGGTGGGCACCTCTGGCGTAGGCAAGAGCCACACTGCG
CGAATCTTGCGCGAAACGTTTCCCTGGCCCGAGAACGTGAATACACTCTC
CTGGACCGGCAGTTCTTCTTTGGGCCGAGTGAAAGAGCATGCTATCCGGC
CTGACATATTGCGGACAGAATATGATCTTGATTGATAACATGACGCCGAA
GGATGCACACTTCGTGCCTATCATTAACGAAATGATAAGTGAGGGCGAAA
AGAGCGCCAACCACACTGAGCATCCGCACAGAAGCGGTTGACCATTGTGT
TTATCTTTAATGTGAATAGCATGCGCCCGGCGAGGAGTTTGAGATGGATA
TGGAGATCCTTAAAAATATGCCACACACCCAGTTGGTCACCTTTGCGACT
CCTGGATCCACCCATCTGGTCGACTGCATCCGCAGGAAGCCGCCATCCCA
TGGTGCACCTGGAAAATAAGCAACGTAAAAAAAAAAAATCAAAAGT
UFO08794.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4880-RA | 1700 | CG4880-RA | 150..1088 | 9..946 | 4325 | 97.9 | Plus |
| CG4880-RB | 1505 | CG4880-RB | 529..1025 | 451..946 | 2145 | 96.4 | Plus |
| CG4880-RB | 1505 | CG4880-RB | 150..531 | 9..390 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16886967..16887411 | 9..453 | 2195 | 99.6 | Plus |
| X | 23542271 | X | 16887621..16888087 | 451..914 | 1985 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:40:28 has no hits.
UFO08794.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:25 Download gff for
UFO08794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4880-RA | 138..1057 | 9..926 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:00:16 Download gff for
UFO08794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4880-RA | 150..1069 | 9..926 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:32 Download gff for
UFO08794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4880-RA | 150..1069 | 9..926 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:32 Download gff for
UFO08794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16886967..16887410 | 9..452 | 99 | -> | Plus |
| X | 16887623..16888098 | 453..926 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:00:16 Download gff for
UFO08794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16781000..16781443 | 9..452 | 99 | -> | Plus |
| arm_X | 16781656..16782131 | 453..926 | 97 | | Plus |
