UFO08795.5prime Sequence
1097 bp (992 high quality bases) assembled on 2011-08-05
> UFO08795.5prime
CAGTCGACATGATAAACAGCAAGATAAGAGAGGACAAGTTGGAAACACTT
GTCTCGCGAAGTTCTGTGCCGATCATCGATCTTGCCCATTGTGGCAAGTC
CCTTGTCCATCGGGTGGGTCAGCAACTCCACAAGGCTTTCACCGAAAAGG
GAATTGCGTTTCTGGTTAACCATGGGATAGCAGAGGACAAGATCAAAGCT
GTTTGGGATCAATTTGACAACTTCTTGGATCTGCCAGCAGAGGTTCAGGA
TCGTTACAGACGAAAGGACGGTGTTAATTATGGATATGTTAGTCCCGGGA
TGGAGCGATTTGATGGAAGTACTCCAGAACTGCGTCACGCCTACAATGTT
TGCAAACTGGATGGACAGAATATTCCAAGGGAGGCACTGCCAGAATTTGC
CGAAGGCATTACCACACTGTGCACGGATTTGAAAGCCATGTCTTTGTACA
TAATGAAGGCCATGGAGGTGGCCCTGGAGATTCCGCCGTCCTTCTTCATC
GACAAACACTCCCAGATGTTGGAAGGAGATGACCTAAACATGACCACCCT
CAGGATGCTCTACTATCCGGCGATTGTGGATGATGAGCCGGGCCAGAGCG
AGGGTGCCATCCGTTGTGGTGCCCATGTGGACTACGGCACCTTCACGCTG
CTCGCCCAGGATTCCGAAGGTGGCTTGGAGGTGCAATTGCCGGGCAGCGA
AAAATGGGAACGGGTGGGTCATTTACCTGGTGCCATACTTATAAACGGCG
GGGAACTTCTGTCCATCTGGACGAAGCAGCGTTACCACGCCCTGCCTCAT
CGCGTCGTCATACCTGAACAAGAACTTATAAGAACCCGTGGCAGACACTC
CATAGCATATTTCTGCCATCCCAATAACTCGATCTTGATATCTCCCAACG
ATCTGTTGAGTGAAGGGGAGGCAAAGAGTGAGACAAAGTATACAGCGCTA
TGACCTGAATACAGAAAAAGTTTATGAACCTACGGTCAGCGATTCTTCAA
GCAGCTTTCCTAGACAATCCGTTTGGCGGCGCGGGCCCAGTAAGTGCTCA
TAATTCATAATATAATCCATATCCTAATCCACTTAGTCTAGGGAATT
UFO08795.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33099-RA | 1248 | CG33099-RA | 121..1108 | 9..993 | 4805 | 99.4 | Plus |
| CG5346-RA | 1921 | CG5346-RA | 1269..1360 | 627..718 | 205 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22529385..22529989 | 794..190 | 3025 | 100 | Minus |
| 3R | 32079331 | 3R | 22529185..22529323 | 932..794 | 695 | 100 | Minus |
| 3R | 32079331 | 3R | 22530039..22530137 | 191..93 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 22530362..22530452 | 99..9 | 440 | 98.9 | Minus |
| 3R | 32079331 | 3R | 22521111..22521202 | 718..627 | 205 | 81.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:40:33 has no hits.
UFO08795.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:15:26 Download gff for
UFO08795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33099-RA | 99..1100 | 1..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:00:43 Download gff for
UFO08795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33099-RA | 116..1117 | 1..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:35 Download gff for
UFO08795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33099-RA | 116..1117 | 1..1004 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:35 Download gff for
UFO08795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22529180..22529322 | 795..936 | 99 | <- | Minus |
| 3R | 22529385..22529987 | 192..794 | 100 | <- | Minus |
| 3R | 22530039..22530136 | 94..191 | 100 | <- | Minus |
| 3R | 22530368..22530457 | 1..93 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:00:43 Download gff for
UFO08795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18354902..18355044 | 795..936 | 99 | <- | Minus |
| arm_3R | 18355107..18355709 | 192..794 | 100 | <- | Minus |
| arm_3R | 18355761..18355858 | 94..191 | 100 | <- | Minus |
| arm_3R | 18356090..18356179 | 1..93 | 95 | | Minus |
