UFO08805.5prime Sequence
1105 bp (995 high quality bases) assembled on 2011-08-10
> UFO08805.5prime
CAGTCGACATGAAAGTACTCCTGGCTTTAACTTTCCTGGCCACTTTGGCT
CTTTCAGTGGCCCTTCCCCAGGTGGGACATGGATCTGTAAATGGACCCAG
TGGGCGCTTCCCTATGACGAAGAATTGGGCGCAACCTCCGGTTGATTTGC
GAAAACCCATTATCTTTCTGCCAGAGGCCACGCCCATTCACGAAGCCCAG
GAGTCGCGCCCCCGACTAGCCAAACATCGCAAGAGTGGAGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCA
CCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAATCG
TCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAA
AACGGTGTAACAAAGGTGAACACTATCCCATATCACCAGCTCACCGTCTT
TCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGGCAAGAATGT
GATAAAGCCGAAAAAACTTGTGCTTATTTTTCTTTACGTCTTAAAAGCCG
TAATATCAGCTGACGGTCTGATATAGTACTGAGCAACTGACTGAAATGCC
TCAATGTTCTTACGATGCAATGGATAAATCCACGTGCTATTCAAGTGATT
TTTCC
UFO08805.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34193-RB | 2333 | CG34193-RB | 989..1219 | 9..239 | 1155 | 100 | Plus |
| CG34193-RA | 806 | CG34193-RA | 58..288 | 9..239 | 1155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17510145..17510280 | 104..239 | 680 | 100 | Plus |
| 2R | 25286936 | 2R | 17509983..17510078 | 9..104 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:44:59 has no hits.
UFO08805.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:03 Download gff for
UFO08805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34193-RA | 28..264 | 1..239 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:29:20 Download gff for
UFO08805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34193-RA | 34..270 | 1..239 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:20 Download gff for
UFO08805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34193-RA | 52..288 | 1..239 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:20 Download gff for
UFO08805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17509977..17510078 | 1..104 | 96 | -> | Plus |
| 2R | 17510146..17510280 | 105..239 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:29:20 Download gff for
UFO08805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13397482..13397583 | 1..104 | 96 | -> | Plus |
| arm_2R | 13397651..13397785 | 105..239 | 100 | == | Plus |
