UFO08806.5prime Sequence
1089 bp (967 high quality bases) assembled on 2011-08-10
> UFO08806.5prime
CAGTCGACATGACGGAACGACAGCCGTTGCTCCTCCAGAGCGATGCCTCT
GACTACGAGGGCAGTCGAGGATCGGCAGCACGACCCGTGCGCAGCTCTCC
GCCGGACAACACTCTCGTCAACGTGCACAGCGAGGACAGCTTAGCAGCCT
CTGGATCGGGAGATGATGAAATTGGATCGACGGATAAGTCCTATAACCCC
ACCCATCATCGCGACCTGGAGCATCCGACGTCCAACTTCGATACCCTGGT
TCATCTGCTGAAGGGCAACATTGGTACGGGCATTCTGGCAATGCCGGATG
CCTTTAAGAACGCCGGACTTTATGTGGGACTCTTTGGCACAATGATCATG
GGAGCCATCTGCACCCACTGCATGCACATGCTGGTCAACTGCTCCCACGA
GCTGTGCCGGAGATTCCAGCAGCCATCGTTAGATTTCTCGGAGGTGGCAT
ACTGCAGTTTTGAGTCGGGACCTTTGGGACTAAGACGATACTCCATGTTG
GCTCGACGAATTGTTACCACGTTCTTGTTTATCACGCAAATCGGTTTCTG
CTGCGTCTACTTCCTCTTTGTGGCGTTGAATATCAAGGACGTTATGGATC
ACTACTACAAGATGCCTGTGCAGATTTACCTGCTTATAATGCTTGGACCC
ATGATCCTGTTGAATCTGGTGCGGAATCTGAAGTATTTGACACCCGTTTC
GCTGGTTGCCGCCCTGCTCACAGTTGCCGGACTGGCCATTACATTCTCGT
ACATGCTGGTGGATCTGCCGGATGTGCACACGGTCAAGCCGGTGGCCACT
TGGGCGACGTTGCCTCTATATTTTGGAACCGCCATCTACGCGTTCGAGGG
AATTGGTGTTGTCCTGCCCTTGGAGAACAATATGCGCACACCCGAGGACT
TTGGCGGCCACCACAGGTGTCCTCACACGGGGAATGGTGATCGTGGCTGC
TTGTACACAGCTGTCGGGTCTCGCTACCTGAAGTACCGCGAACACGTGGA
AGGCAGCATTACCCTAAATCTGCCGCAAGGAACAACTTTCCAGTGGTGCG
GATTTCATGGCGGGGGCATCTTCCCTCGATACCTCAGGT
UFO08806.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13384-RL | 2226 | CG13384-RL | 109..1183 | 9..1074 | 4955 | 98.1 | Plus |
| CG13384-RK | 2484 | CG13384-RK | 367..1441 | 9..1074 | 4955 | 98.1 | Plus |
| CG13384-RC | 2430 | CG13384-RC | 313..1387 | 9..1074 | 4955 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8386482..8387369 | 143..1027 | 4100 | 98.2 | Plus |
| 2L | 23513712 | 2L | 8386247..8386385 | 9..147 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:45:03 has no hits.
UFO08806.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:04 Download gff for
UFO08806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RG | 390..1474 | 9..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:29:48 Download gff for
UFO08806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RC | 313..1397 | 9..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:22 Download gff for
UFO08806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RC | 313..1397 | 9..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:22 Download gff for
UFO08806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8386247..8386385 | 9..147 | 100 | -> | Plus |
| 2L | 8386487..8387382 | 148..1034 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:29:48 Download gff for
UFO08806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8386247..8386385 | 9..147 | 100 | -> | Plus |
| arm_2L | 8386487..8387382 | 148..1034 | 97 | -> | Plus |
