UFO08808.5prime Sequence
1095 bp (1003 high quality bases) assembled on 2011-08-10
> UFO08808.5prime
CAGTCGGACATGCAAACATTTAAGGTCTGCGCTCTCCTGGCGTTCTGCTT
CGTCCTCGTTTCCGCCCGCGGCAGCAAACGGCGCGATGGCACCGTTACGA
TATCGGAGAGCGAACGAAAGAACATTGAGGACTTTCTGTTGGCCAAGCTT
AAGCAAAATTGCAGGCAGGAAGACGATCGCGCCTGTAAGATGGTCAAGAT
GTCTATTGTGATGAACCATCTGTACCTGAACACCCGTATCGACCTTGGCG
ACCGATTCAAGGTCACAGAAAACGGGAATATCTCAATGGTACCAGATGAT
CCGGAGGTCAACCAGCTGCTGTCACGCTCTATGGGGTCCGATGAGGAGAC
CTTCGCCCTTCTGATGGCCAACAAGCTGTGGAAATTCATTCGTTCGCGCT
CCCTGCGATACAAGTTCTCAGAGAACACGGACTTTGTGATCAACAGCGAT
CCGGAGGGCAGTCTGAATTTGGGCGTATCAGTGCGCCCCCTGGAGGCGTT
GCAGGAAGGGCGAGGCAAGATGAAGAACATGGGGCCACTGCTGATGATGA
TGGCGGCCAAGACGGGCATGGTGGGAGCGCTTCTGCTCAAAGGACTCTTC
CTGCTGGCCGGCAAGGCTCTAATTGTCTCGAAAATCGCCTTGCTGCTGGC
GGTGATCATCTCACTGAAGAAGCTGCTCTCTAGCAAGAAAACCATCGTGG
AGGTGCCATCCCACCACGACAGCTATAGCTCCGGGTGGTCGAGGGCCTTT
GACGGGTTCGTGGAGGGACTTGTAGACGTGCCCGCCGATATATTGGCCAA
GGAGGTGCAGCACCAGCAGGAGCAGGCCCAAAACATGGCTTACAGTGCCA
ACAGCCGGGGAAAGTGCGCAAGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGTCATATCATATCATAATCATAATCATAATCACA
CTAGGCCTAGAGATCCTGTTCATGACTAGTGCTTGGATTCTCCACAATAA
AAAACGCCCGGCGGCAAACGAGCGTTCTGAACAAATCGAGATGAGTTCTG
AAGTCATTAACTGGATCATTCACAGATTCAAGCGGTCGAATTCCA
UFO08808.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi3-RB | 1381 | CG1150-RB | 233..1103 | 10..878 | 4275 | 99.5 | Plus |
| Osi3-RA | 1129 | CG1150-RA | 233..1103 | 10..878 | 4275 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6217316..6217908 | 275..866 | 2915 | 99.8 | Plus |
| 3R | 32079331 | 3R | 6216638..6216819 | 95..276 | 895 | 99.5 | Plus |
| 3R | 32079331 | 3R | 6216064..6216153 | 10..99 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:45:07 has no hits.
UFO08808.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:05 Download gff for
UFO08808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi3-RA | 220..1099 | 2..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:30:18 Download gff for
UFO08808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi3-RA | 224..1103 | 2..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:23 Download gff for
UFO08808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi3-RA | 224..1103 | 2..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:23 Download gff for
UFO08808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6216055..6216153 | 2..99 | 95 | -> | Plus |
| 3R | 6216643..6216818 | 100..275 | 100 | -> | Plus |
| 3R | 6217317..6217921 | 276..878 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:30:18 Download gff for
UFO08808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2041777..2041875 | 2..99 | 95 | -> | Plus |
| arm_3R | 2042365..2042540 | 100..275 | 100 | -> | Plus |
| arm_3R | 2043039..2043643 | 276..878 | 99 | == | Plus |
