UFO08809.5prime Sequence
1138 bp (1045 high quality bases) assembled on 2011-08-10
> UFO08809.5prime
CAGTCGACATGTTGCAGCGCGTGTCGCGTAGATTTCCCTCCTTAAGGCGA
TGCGGCCTGCGAACGGCATCCACTGTGCCCACAAATCAGGCGCAGCCGGG
CGAGGTAGAGGAGGAGGTCAGTGCGACGGTGAAGAGAATCCGCTCGGAAT
TGGCAGCGGATAAGCAGAAACTTAAGTGGCGCACTCCGATTGGCGACCGG
CCGGAGGATTGGAACAGCAAACTGAAGCTGTTCTCCAATGCGGAGCAAAC
CTCAGACTTCATCGTGATGATGCAGAAGCCCATCGATCTAAGTCCGCGGA
ACATTCGACAGTGGTGGGAGAACCGGGAGGAGCGTATTGAGCGGCACATG
CAGCAGTTTGTCCCGGAAAGGCACAAGATTCTGGGCGCCGAATTGGCTGC
GGCGCATTTCATACTGTACCGCGGCGGGGCCGTCAAGTTCATCAACGATA
CCCACTGGCGCCGGGCCTCCAAAGATGGCGAGTTCAAACTGCCTAATAAG
TTTGATCCTCGCTATAAAGTGGAGGCCTTGAGGTGTGATAACATGGAACT
TTACTACGAGGGGCTGGAGAACCTGCGCTGCCTGGACTCCCTTAAGTTCC
TGTCCTTTCACAATGTGAAAAGCTTTGATGACTGGTGTCTGGATAGGATT
TCGGGAGGTGGCTTCCCTAACCTGGAAGTGCTCGACCTCTCGTGCACTCA
AATCACCAGCAATGGATTGGCCTGTCTGTATCGTTTTCCTAAACTTAAAT
TACTGATTTTGAATGATCCAAAGGAGACCCTAGAACTGGAATTGTCCACG
GTCATGTTAGAGGAGGCCATGCCCGCTTTAAAATTGTTGGCGCCGACGCT
ATTCACAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACATTAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGACAATTCAGATGGAGTTCTGAGTTCATTACT
GGAATTTATTCAACAGAAGTCAGCGGCTCGATATCAATACCGCCCGCCTG
CCACTCATGGAGATACTGTGAATCATAAGCAGCTGCGA
UFO08809.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4042-RB | 990 | CG4042-RB | 76..927 | 9..859 | 4235 | 99.9 | Plus |
| CG4042-RA | 951 | CG4042-RA | 37..888 | 9..859 | 4235 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20770206..20771057 | 859..9 | 4210 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:45:12 has no hits.
UFO08809.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:05 Download gff for
UFO08809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4042-RA | 57..922 | 1..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:30:51 Download gff for
UFO08809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4042-RA | 27..892 | 1..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:24 Download gff for
UFO08809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4042-RA | 27..892 | 1..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:24 Download gff for
UFO08809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20770202..20771067 | 1..864 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:30:51 Download gff for
UFO08809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20763302..20764167 | 1..864 | 99 | | Minus |
