UFO08813.5prime Sequence
1108 bp (1007 high quality bases) assembled on 2011-08-10
> UFO08813.5prime
CAGTCGACATGGCCATGGACTTTGACGAGATACTGGTCAAATGCGGCGAC
TCCCATCGCTACCAGTACATGCTATTGGCTCTCTACGGACTATTGATGTT
CATTGTTTCCCGGCACTACTTCGCCCAAAACGTTATTGGATTTGTGCCCG
ATCATTGGTGCTATCACGAACAGCTGGAGAATCGTAGCTATGCCGAAATA
GCTGCGATATACGCCCCATTCAAGAGGCCTTCGTGCACGCGACTGGCATC
GATCAACATGGATGGGAGCAATGCCACGGCCAGCAGTGAGCCCTGCAATC
GATGGATTTACCACTATGACCATGGATTCATAAGCATGAACGCTGATCTG
AATTGGGTTTGTGATGATGCGTACAAGGCTCGAGTGGGTCAGTCCCTGTT
CTTTGTGGGCTCCATGTGTGGCACCCTGTTGTTTGGTCTACTTGGCGATC
GAATCGGACGCATCAAGGCTGTAGTTTTGGCCAATTGCTGTGGCTTCCTG
GGCGACTCGGCTACCATTTTTGCAGAGACCCTGTTGACTTTCTCGGCCAG
CCGATTTGTATCTGGACTGGCTGCAGAGGCAAACTCCTACCTCATGTTTA
TTTTGGTCTTGGAGTACGTGTCTCCGACGATGCGAAGTGTGGGCTTGAAC
TTGACAATGTGTGTTTTTTACGGCCTGGGAATGATATGTGCATCTTGGCA
GGGCGTCTGGTTGGGTAGTTGGCGTTCCTTCATGGTCTGGACCGCCCTGC
CCCAGCTGTTGGTCACCGGGTTCTACTTTCTGATTCACGAGAGCGCACAG
TGGCTGGTCACGCGCCAAGACTTCGATGGAGCTGAGTTGAGGCTACGCCG
TGTGGCCAAGTTCAATCGGCGCGATGTCAGCGAGGCGGACTATGAGCTAT
TCCGTCAGCATTGCAGACGAGGAGTCGGAGGCCAGAAGCCAGATGTCCAT
GCAGAGCAGCACGTCTCATTGACTCATTCAAGCTGCCACGCTGCGTCTCC
GCTGATCTATTGTAACGGGTTGTCTTCCGGATAGTGACGCCTTTGTTACC
ACACAATGTCTACGCAATTGAAAGTCTGACCAATACACGGTTCGCATGTC
AGCTTCGC
UFO08813.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14856-RA | 1999 | CG14856-RA | 84..1182 | 6..1099 | 5040 | 98 | Plus |
| CG14855-RA | 1973 | CG14855-RA | 246..829 | 14..597 | 685 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14799789..14800190 | 606..1002 | 1745 | 98.5 | Plus |
| 3R | 32079331 | 3R | 14799069..14799410 | 6..347 | 1710 | 100 | Plus |
| 3R | 32079331 | 3R | 14799475..14799733 | 348..606 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 14796958..14797201 | 354..597 | 395 | 77.5 | Plus |
| 3R | 32079331 | 3R | 14796649..14796843 | 113..307 | 300 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:45:24 has no hits.
UFO08813.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:07 Download gff for
UFO08813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14856-RA | 75..1160 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:32:20 Download gff for
UFO08813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14856-RA | 79..1164 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:30 Download gff for
UFO08813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14856-RA | 79..1164 | 1..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:30 Download gff for
UFO08813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14799064..14799410 | 1..347 | 99 | -> | Plus |
| 3R | 14799475..14799733 | 348..606 | 100 | -> | Plus |
| 3R | 14799790..14800213 | 607..1026 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:32:20 Download gff for
UFO08813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10624786..10625132 | 1..347 | 99 | -> | Plus |
| arm_3R | 10625197..10625455 | 348..606 | 100 | -> | Plus |
| arm_3R | 10625512..10625935 | 607..1026 | 97 | -> | Plus |
