UFO08814.5prime Sequence
1118 bp (1015 high quality bases) assembled on 2011-08-10
> UFO08814.5prime
CAGTCGACATGATTTCTCGCCGCAAGATCATATCGCGCTCCCTAGACAAT
TTGGATGCCATCGGGCAGGAAGAGCAGGAGGAAGACGTCTGGCACGATCG
CGAAAAGCTCTTCAGGGATCACATCAACGAGGTTCTGTCCAAGTGGGAGC
AAATCGACGACGAGATCTGGGCCAAGATAATTGTCTTCGAGAAAAATCGG
CGAGTGGCCAAGGCCTACGCCCGCTCCTCTGTGATAACCATAAATGGATC
TAAGAATGGATTCGATGGAGTGCGTATTGGGCTGAATGGCTTCGATAATC
CGATGCGCGATGCGGAGACGAAGGTGATCAAAAAGTCCATCGGCGATGGA
TTCAAGATCAAAATGGACGACACCGGCAACATATTCATCAAGCGGTATGG
CAAGAGCAGCATCTACGTGAACAGCACATCGCAGGGCAACGAGGAGACGG
TGATCGGTGGCGACATAATCCAAATGCCGCAGATGTCCCTCACCGCGGCC
ACCTCCGCTCGACTCTTTGATATGAAGAAGTTCCAGACGAACATAAACCG
CGAGTTTGCCCGCACTTATCCGGAGCGCGGAAGACTGGAACGGCAGTGCC
TGTCCGCCGTATCGCTTGTCAAGTCGAACAACAATCTTATCAACTCTCCG
GTCTGGATACTCGTGGTCAACGTGGTGGCCATGGACATGCTGAGGAGCCG
CCTCCAAACGATTCCCAAGTCACTGGATGCGATGGGCATGCGAGTGCCGC
TGACGAACAGCAGCGAGGATCCATACTCCACCATCGAAAGCCAAGTGGGA
TTGATCTATCCTACGCCCGCCGCGTCGGATGATTCCCAGAACTCCCAGCA
CTCGAGCAACTCCAGCAAGGGACGGCGCAGCATCTTTAGTGCCGCCTTCC
TCAACGAGGGTCCATATGTGCCCAAGCCCGACTACGAATTTGGCGGATCT
TTGACGCCCATAATATGCGGACAAGAAGCGACAGAAAGAGCAGCGGGTCG
CAGCAGCGGAAGAAGCAGATGTTCCGTACTACTGCGGACTCTTGGGGGCG
TATTTCCCACTTCATCAAGTCTTCGAGCAGCCGGTGCCTGGAAGAACCTC
AAGACACATGCCCAAGAG
UFO08814.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13183-RA | 2211 | CG13183-RA | 399..1472 | 9..1083 | 5170 | 99 | Plus |
| CG13188-RB | 2842 | CG13188-RB | 857..1128 | 150..421 | 325 | 75.1 | Plus |
| CG13188-RA | 4532 | CG13188-RA | 857..1128 | 150..421 | 325 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11905395..11906047 | 926..274 | 3265 | 100 | Minus |
| 2R | 25286936 | 2R | 11906109..11906267 | 274..116 | 795 | 100 | Minus |
| 2R | 25286936 | 2R | 11906339..11906447 | 117..9 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 11905131..11905280 | 1076..925 | 475 | 93.5 | Minus |
| 2R | 25286936 | 2R | 11955618..11955718 | 150..250 | 235 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:45:29 has no hits.
UFO08814.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:08 Download gff for
UFO08814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13183-RA | 387..1480 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:32:53 Download gff for
UFO08814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13183-RA | 391..1484 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:31 Download gff for
UFO08814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13183-RA | 391..1484 | 1..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:31 Download gff for
UFO08814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11905111..11905278 | 927..1095 | 91 | <- | Minus |
| 2R | 11905395..11906046 | 275..926 | 100 | <- | Minus |
| 2R | 11906109..11906266 | 117..274 | 100 | <- | Minus |
| 2R | 11906340..11906454 | 1..116 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:32:53 Download gff for
UFO08814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7792616..7792783 | 927..1095 | 91 | <- | Minus |
| arm_2R | 7792900..7793551 | 275..926 | 100 | <- | Minus |
| arm_2R | 7793614..7793771 | 117..274 | 100 | <- | Minus |
| arm_2R | 7793845..7793959 | 1..116 | 96 | | Minus |
