UFO08815.5prime Sequence
1073 bp (973 high quality bases) assembled on 2011-08-10
> UFO08815.5prime
CAGTCGACATGGGCAGCGCGCTGGAAAACTATGTGAATCAAGTGCGCACA
CTGAGTGCGTCCGGAAGCTATCGGGAGCTGGCCGAGGAGCTGCCGGAGTC
GCTGTCGCTGCTAGCCCGCAACTGGAGCATTCTGGACAACGTGCTGGAGA
CGCTAGACATGCAGCAGCACTCGCTGGGCGTGCTCTATGTGCTCCTGGCC
AAACTGCACAGTGCGTCCACCGCGAATCCGGAGCCGGTACAACTTATCCA
GCTGATGCGGGACTTTGTGCAGCGCAACAATAACGAGCAGCTGCGCTATG
CGGTGTGCGCCTTTTACGAAACATGCCATCTGTTTACCGAGTTTGTGGTG
CAAAAGAACCTCAGCATCCTGGGCATACGCATCATTTCGCGCGCCATCGA
CCAGATTCGACAGTTGGAAACCCAGTTAACTCCCATACACGCCGATCTCT
GCCTGCTCAGCCTGAAGGCGAAAAACTTCAGTGTGGTGCTGCCGTATCTG
GACGCGGACATCACGGACATCTCCACCGTGGCAGCCGAGTGCAAGACGCA
ACAGCAGCAGCAGTCCCAGCACGCGGATGCCAACAACGATGCCAAGTACT
TCTTGCTGTACTTCTACTACGGCGGCATGATCTACACGGCGGTGAAGAAC
TACGAGCGTGCGTTGTACTTCTTCGAAGTCTGCATCACCACTCCGGCAAT
GGCCATGTCGCACATCATGCTGGAGGCCTACAAAAAATTTCTCATGGTTT
CACTCATCGTCGAAGCAAGATAGCGTATATACCAAAAAACACACAGGTCA
TTGGTCGTTTTATGAAGCCGATGGCCAATCACTACCACGACCTGTCAATG
TGTACGCGAATTCGTCTAGCGAAGAGCTGCGCATTATCATACTCAAGTAC
AGTGAAGCATTTACGCGTGATAACAATATGGGACTGGCCAGCAGGTGCTA
CCCTCCTTTTACAGCGAAACATCCAGCGCTCCCTAAACCTTCTTGACCCT
TTCCCTGACGATGTGGCCAGTCTGTCACTGCAGCGCAGTCGAGCATACGT
TCATTCCAATGATAATCGGTGAA
UFO08815.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN3-RA | 1679 | CG18332-RA | 113..1158 | 9..1042 | 4865 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20840725..20840988 | 576..313 | 1320 | 100 | Minus |
| 3L | 28110227 | 3L | 20841048..20841297 | 312..63 | 1250 | 100 | Minus |
| 3L | 28110227 | 3L | 20840478..20840668 | 765..575 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 20840230..20840403 | 940..768 | 820 | 99.4 | Minus |
| 3L | 28110227 | 3L | 20841409..20841464 | 64..9 | 280 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 631..695 | 779..715 | 109 | 63.1 | Minus |
UFO08815.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:09 Download gff for
UFO08815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN3-RA | 112..1178 | 9..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:33:23 Download gff for
UFO08815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN3-RA | 113..1179 | 9..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:32 Download gff for
UFO08815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN3-RA | 113..1179 | 9..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:32 Download gff for
UFO08815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20840225..20840401 | 770..944 | 98 | <- | Minus |
| 3L | 20840473..20840667 | 576..769 | 99 | <- | Minus |
| 3L | 20840726..20840988 | 313..575 | 100 | <- | Minus |
| 3L | 20841048..20841296 | 64..312 | 100 | <- | Minus |
| 3L | 20841410..20841464 | 9..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:33:23 Download gff for
UFO08815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20833573..20833767 | 576..769 | 99 | <- | Minus |
| arm_3L | 20833325..20833501 | 770..944 | 98 | <- | Minus |
| arm_3L | 20833826..20834088 | 313..575 | 100 | <- | Minus |
| arm_3L | 20834148..20834396 | 64..312 | 100 | <- | Minus |
| arm_3L | 20834510..20834564 | 9..63 | 100 | | Minus |
