UFO08816.5prime Sequence
1140 bp (1050 high quality bases) assembled on 2011-08-10
> UFO08816.5prime
CAGTCGACATGGTGAAGGTTAAGTGCTCCGAGCTGAGGATCAAGGACAAG
AAGGAACTCACCAAGCAATTGGATGAGCTCAAGAATGAGTTGCTCAGCCT
GCGCGTGGCCAAGGTGACCGGCGGAGCTCCCTCCAAGCTCTCCAAGATCC
GCGTTGTCCGCAAGGCCATCGCTCGCGTCTACATTGTGATGCACCAGAAG
CAGAAGGAGAATCTGCGCAAGGTCTTCAAGAACAAGAAGTACAAGCCCCT
GGATCTGCGCAAGAAGAAGACCCGCGCTATCCGCAAGGCCCTGTCTCCGC
GCGACGCCAACCGCAAGACCCTCAAGGAGATCCGCAAGCGCTCCGTCTTC
CCCCAGAGGAAGTTCGCCGTCAAGGCCGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTG
CCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAA
ATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATAT
TCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACCCGCC
ACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCA
CTCCAGAGCGATGAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAG
GTGAACACTATCCCATATCACAGCTCACCGTCTTTCATTGCCATAACGAA
ATTCGATGACATCATCAAGGCGGGCAAGAATGTGAATAGCGATAAAACTT
GGCCTAATTCTACGCCTTAAAAGCGTTATACCCACCTGAA
UFO08816.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL35-RC | 590 | CG4111-RC | 120..488 | 9..377 | 1845 | 100 | Plus |
| RpL35-RA | 606 | CG4111-RA | 140..508 | 9..377 | 1845 | 100 | Plus |
| RpL35-RB | 507 | CG4111-RB | 41..409 | 9..377 | 1845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5673217..5673445 | 149..377 | 1145 | 100 | Plus |
| X | 23542271 | X | 5672997..5673134 | 11..148 | 690 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..290 | 943..1002 | 113 | 67.2 | Plus |
UFO08816.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:09 Download gff for
UFO08816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL35-RA | 210..584 | 2..377 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:33:55 Download gff for
UFO08816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL35-RB | 35..409 | 2..377 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:35 Download gff for
UFO08816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL35-RB | 35..409 | 2..377 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:35 Download gff for
UFO08816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5672990..5673134 | 1..148 | 97 | -> | Plus |
| X | 5673217..5673445 | 149..377 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:33:55 Download gff for
UFO08816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5567023..5567167 | 1..148 | 97 | -> | Plus |
| arm_X | 5567250..5567478 | 149..377 | 100 | == | Plus |
