UFO08820.5prime Sequence
497 bp (497 high quality bases) assembled on 2011-08-10
> UFO08820.5prime
CAGTCGACATGGCCGAGATCAGGGAGGATGAGGAGGAAAAGAAGTCGGGC
ATCAGCATTCTGCCCGGTCCGGAACTATTGGCGCTTCCCGGCTTCGATAC
CCGGGCCAGTATTGCATCGGCTGCATTAAGTGATGTTCCAAGTGATGTGA
TCATTAAGTCTCGCATTCGATACGGCAGTCCTCTGTCAGCCTGCAAAGGA
TTACTTTTGGAGTATGCGAAGAGCACGACCATTCACGGCATACGCTACAT
CTTCGAGGTTCACAGACCGATCTATGAAAAACTTTATTGGCTTTTCTTCA
CGTGCATTTCCGTTTACTTTGCCGTTTCACTTATCTGGGACACCTATCTA
AAGTGGCAGGAATCGCCGGTTATTCTAGGTTTCGACGAGACTTTGGTGCC
AGTGCATAAGATACCGTTTCCCACAATTACCATTTGTCCGGAAATCAAAT
GGAACGCCATGTCTTTGACTATACTAACGTATCGCGACAACTTTGGG
UFO08820.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ppk-RA | 2462 | CG3478-RA | 39..528 | 9..497 | 2410 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14380863..14381134 | 280..9 | 1360 | 100 | Minus |
2L | 23513712 | 2L | 14380588..14380805 | 497..281 | 1025 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:45:47 has no hits.
UFO08820.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:11 Download gff for
UFO08820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppk-RA | 28..526 | 1..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:34:54 Download gff for
UFO08820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppk-RA | 30..528 | 1..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:39 Download gff for
UFO08820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppk-RA | 30..528 | 1..497 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:39 Download gff for
UFO08820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14380588..14380805 | 281..497 | 99 | <- | Minus |
2L | 14380863..14381143 | 1..280 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:34:54 Download gff for
UFO08820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14380588..14380805 | 281..497 | 99 | <- | Minus |
arm_2L | 14380863..14381143 | 1..280 | 98 | | Minus |