Clone UFO08820 Report

Search the DGRC for UFO08820

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:88
Well:20
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptppk-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO08820.5prime Sequence

497 bp (497 high quality bases) assembled on 2011-08-10

> UFO08820.5prime
CAGTCGACATGGCCGAGATCAGGGAGGATGAGGAGGAAAAGAAGTCGGGC
ATCAGCATTCTGCCCGGTCCGGAACTATTGGCGCTTCCCGGCTTCGATAC
CCGGGCCAGTATTGCATCGGCTGCATTAAGTGATGTTCCAAGTGATGTGA
TCATTAAGTCTCGCATTCGATACGGCAGTCCTCTGTCAGCCTGCAAAGGA
TTACTTTTGGAGTATGCGAAGAGCACGACCATTCACGGCATACGCTACAT
CTTCGAGGTTCACAGACCGATCTATGAAAAACTTTATTGGCTTTTCTTCA
CGTGCATTTCCGTTTACTTTGCCGTTTCACTTATCTGGGACACCTATCTA
AAGTGGCAGGAATCGCCGGTTATTCTAGGTTTCGACGAGACTTTGGTGCC
AGTGCATAAGATACCGTTTCCCACAATTACCATTTGTCCGGAAATCAAAT
GGAACGCCATGTCTTTGACTATACTAACGTATCGCGACAACTTTGGG

UFO08820.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
ppk-RA 2462 CG3478-RA 39..528 9..497 2410 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14380863..14381134 280..9 1360 100 Minus
2L 23513712 2L 14380588..14380805 497..281 1025 99.1 Minus
Blast to na_te.dros performed on 2014-11-26 23:45:47 has no hits.

UFO08820.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:11 Download gff for UFO08820.5prime
Subject Subject Range Query Range Percent Splice Strand
ppk-RA 28..526 1..497 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:34:54 Download gff for UFO08820.5prime
Subject Subject Range Query Range Percent Splice Strand
ppk-RA 30..528 1..497 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:39 Download gff for UFO08820.5prime
Subject Subject Range Query Range Percent Splice Strand
ppk-RA 30..528 1..497 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:39 Download gff for UFO08820.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14380588..14380805 281..497 99 <- Minus
2L 14380863..14381143 1..280 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:34:54 Download gff for UFO08820.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14380588..14380805 281..497 99 <- Minus
arm_2L 14380863..14381143 1..280 98   Minus