UFO08826.5prime Sequence
1115 bp (1000 high quality bases) assembled on 2011-08-10
> UFO08826.5prime
CAGTCGACATGAAATCCACCGACAGCGCCAAGTGCCTGGGCAGCAAGTCC
TTGGCAATCTGTTGCCTGCTCCTCCACCTCCTACTCTGCATTAGACCAGC
AGTGTCGCAGACTCAAAGTCCACAGCGTTATCTGCATAATGTGGACAGCA
ATAGCAACAACAACGAACGCCTGCACCAGATACTCAAGGGATCCGGAGCA
GGATCGGGAGCCACGCAGCTCAACTGGCCACAGCCTCCGAAGCAAACTGT
CCCCAACGTCAAGACTGAGCTGGCCAAGCTAAACAACACTTACGTTTACC
AGAACGCCTGGCCGGCAAACAATGTGAAACTGGGTGCAGTGACAGCTGTA
AGTTTCGACAAGGCCGGCAACGTGGTAATCTTCCATCGCGTGAATCGCGT
CTGGGGACAGACCACATTTGATAACAGGAACCAGTACCAGGAGAAGTACC
GCGGGCCCATCAGGGAGAGCACCATCCTGGCACTGGAGCCCGCAACAGGC
AAAGTGCAATACGACTGGGGCAAGAACTTTTTTTACATGCCACATGGCCT
GACCGTGGACCCCGAAGACAACGTTTGGTTAACAGACGTCGCCATGCACC
AGGTTTTTAAGTTCCCGCCCCGTGGAGGCGATGGAAAACCAGCGTTGACT
CTGGGCGATGCCTTCCAGCCCGGTTCAGGACGCAAATTCTGCAAGCCCAC
CTCGGTGGCGGTGTTGGATAATGGGGACTTCTTCGTGGCGGATGGATACT
GCAATGCTCGCATCCTTAAGTACTCACGAAAAGGCGAATTGATCCTCTTC
TGGGGACAGAACACCTTCTCCGGCATATCCTACGACGTTGCGCCCCAGAC
TTCTTCGCGATTCCCCACGCTCTGACTCTCGTCCCGGGAGTTGCAGTTAC
TCTGCGCAGCTGATAGGGAGATGGGCGCGTACAGTGCTTCCTCTCGAGCA
ACGGCACTTCACTCACAGTACCACACCAGCTGATAGGGGACCGCCTCTTT
CAGCAATGCCTTACACCCGGGCCAGCGGGTGGCAGCCTGTTCATGTCCAC
CGGACCACCCGCCCGAGTAGGCATCAATCTCTGGACATTATAAGGAGGGT
GCACGCTTTCTGCCT
UFO08826.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pal1-RA | 2621 | CG12130-RA | 510..1610 | 9..1110 | 4985 | 97.6 | Plus |
| Pal1-RD | 2235 | CG12130-RD | 124..1224 | 9..1110 | 4985 | 97.6 | Plus |
| Pal1-RC | 1950 | CG12130-RC | 124..1224 | 9..1110 | 4985 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9961563..9962036 | 530..999 | 2110 | 98.7 | Plus |
| 2R | 25286936 | 2R | 9960763..9961003 | 289..529 | 1205 | 100 | Plus |
| 2R | 25286936 | 2R | 9960523..9960703 | 108..288 | 905 | 100 | Plus |
| 2R | 25286936 | 2R | 9960201..9960302 | 9..110 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:46:17 has no hits.
UFO08826.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:15 Download gff for
UFO08826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12130-RB | 505..1550 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:38:24 Download gff for
UFO08826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pal1-RC | 119..1164 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:51 Download gff for
UFO08826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pal1-RC | 119..1164 | 1..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:51 Download gff for
UFO08826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9960196..9960302 | 1..110 | 96 | -> | Plus |
| 2R | 9960526..9960703 | 111..288 | 100 | -> | Plus |
| 2R | 9960763..9961003 | 289..529 | 100 | -> | Plus |
| 2R | 9961563..9962066 | 530..1037 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:38:24 Download gff for
UFO08826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5847701..5847807 | 1..110 | 96 | -> | Plus |
| arm_2R | 5848031..5848208 | 111..288 | 100 | -> | Plus |
| arm_2R | 5848268..5848508 | 289..529 | 100 | -> | Plus |
| arm_2R | 5849068..5849571 | 530..1037 | 96 | -> | Plus |
