UFO08831.5prime Sequence
1134 bp (1031 high quality bases) assembled on 2011-08-10
> UFO08831.5prime
CAGTCGACATGGCGAGCAAAAGAAAGCACCAAGCATCCCAGAAAGTGAAA
GAGGAATCCTTCAAGAAACACACGCTTGACTCCGATGAAGAGGATTCTGA
CGACTACGAAAGGGAATACCTCAATGATAGCGACATTGAGGGCGGCGAGG
AGGGCGTGGCAAAAGTGGAAGACGATGTGAAGGTAACACCCTTCAATATG
AAGGAAGAACTGGAGGAGGGACACTTCGACAAAGATGGTCACTACCATTG
GAACAAGGAGACGGAAGCAAAGGACAATTGGTTGGACAACATAGACTGGG
TTAAAATTGGCACACAGAAGAACGCCTTCGACCCGGCAAAAGATGAAGAA
AACTCTTCCGATGAGGAGAAGAACGAACCCGTGGGCAAGGCCTTTAACTT
GTCCATGAACCTCATGAAAATGGTCGAGTTTATGAAACCGGGAGAGACTG
TCAAGATGACCCTGCAGCGTCTGGGTAAGCAGCGCCCCGTCCTAACAACC
CTTCAGAGGATTAAGCAGAAAAAGGCCGGCATCGTTGACCCAAAGACACA
GGAAATCTCTCAGCTCACCGAGCTGGCCAACGAGATTCTCTCGAAGACGG
GCAATATGGATATATATCAGGATACGTACGAAAGCATCAAGGCCAAGATC
GCCGATTTGCCAGGAACGAGCAAACCTAAAGTAGCCGATGATATTGATAT
GTATGCAGATGATTTCGAAACGAAAGAATTGGAGCGCTCTAAGACATCGT
CGAGTGATAGCTCCAAACCAACGACGACTACCTCAGAGGTGACCTGAGAG
TTTAAATGGTCGCAGGATGAGACTGATATCCAGGGACCCTTTTCCACGGA
GAAAATGTTGAAATGGTCCCAGGAGAACTACTTTAAAAACGGAGTCTATG
TGCGAAGTGCGGCGAAAACACAAATTTCTATACAGCAACCGCATTAGATT
TCGATTTGTACTTGGCAAGCTTTCTAGACCATTCGGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATATCATTATCATATCATAATCACACTAGG
CCTAAGGAGATTCTGTGTCATGACTAGTGGCTGATTCCTCACCAATAAAA
ACGCCCGACGCAACGACGTTCTGACACTTCGATG
UFO08831.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| holn1-RA | 1198 | CG5198-RA | 92..1048 | 9..964 | 4700 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10436507..10437166 | 306..964 | 3140 | 99.4 | Plus |
| 2L | 23513712 | 2L | 10436247..10436441 | 111..305 | 975 | 100 | Plus |
| 2L | 23513712 | 2L | 10436086..10436194 | 9..117 | 530 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:46:31 has no hits.
UFO08831.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:17 Download gff for
UFO08831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5198-RA | 96..1060 | 9..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:39:51 Download gff for
UFO08831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| holn1-RA | 92..1056 | 9..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:56 Download gff for
UFO08831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| holn1-RA | 92..1056 | 9..973 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:56 Download gff for
UFO08831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10436249..10436441 | 113..305 | 100 | -> | Plus |
| 2L | 10436086..10436189 | 9..112 | 100 | -> | Plus |
| 2L | 10436507..10437166 | 306..964 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:39:51 Download gff for
UFO08831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10436086..10436189 | 9..112 | 100 | -> | Plus |
| arm_2L | 10436249..10436441 | 113..305 | 100 | -> | Plus |
| arm_2L | 10436507..10437166 | 306..964 | 99 | == | Plus |
