UFO08835.5prime Sequence
1128 bp (1021 high quality bases) assembled on 2011-08-10
> UFO08835.5prime
CAGTCGACATGGAAAAATATTTAACAAAAATGCCCATCAAATCAAAAGCA
AATGAAGTTCCCAAGGAAGAGGCGGGCGTCAAAAAGGAGACTCCCAAAGT
GGCAAGGAAAGCAACAAAAAAGGATACTCCAAAAGAGTTGAAAGATAAAG
AAAATGCTGGAGATGATAATACGCCAAAGCAAACGAAAGGAAGACCCGGT
AGACCGGCTGCCAAGCGAAAAAATCTGGATACTCCAGATGTGACTGAGAA
GTTAGCGATGGAGGAAGAAAATCCGCCCAAGCGCCGGAGTTCCAGGCTGA
CCAGAAGCACTCGTTCAATGGCAGAGGATGGGTCTCCATCACCGGAGAAG
GAAAAGCCCGAAAAGCTTCCCTTTATTAAATACAAGGGTGCTATAAAGTA
TTTCACGGAGAGCCAGGATATTGCGGCATCTGCTGACGATGTTTTGCAAT
GGGTGGAAAAACAAAAAGATGAGGTAGTGCCCATGGCCTTCGACATGGAG
TGGCCCTTCTCTTTCCAAACAGGACCTGGCAAGTCTGCCGTCATCCAGAT
ATGCGTGGATGAAAAGTGCTGCTACATATACCAGCTGACTAATGTGAAGA
AACTGCCTGCGGCCCTGGTGGCCCTTATCAATCATCCCAAAGTGCGATTG
CATGGCGTGAACATAAAGAACGATTTCCGAAAGCTGGCACGTGATTTCCC
CGAGGTTACAGCCGAACCACTGATAGAGAAATGTGTGGACTTGGGTCTTT
GGTGCAATGAGGTCTGTGAGACCGGCGGGCGCTGGAGCTTGTAGCGATTA
ACCAACTTTATAGCCAAAAGCCATGGACAAAAGCAAGAAGTGCGCATGAG
CAAGTGGCATGTCATTCCGCTGGACGAGAATCACTAATGTACGCCGCCAT
CGATGTCTATATTGGTCAGGTTATCTATCGTGATTGGAACGCCCGCGAGA
AGGTCAAGATTAAAATGAAGAAGAGTCAAGGAAAAGACGGAGATGCTGGC
CTTTAAGCATGAAAGCATTGGGAGAAGACATTCCTGACAGATCACCAGTG
ACTCTTGTCAGCTTCTAGACCCTTCGTTGGCGCCGGGCCCAGGTAGTGGC
TAATCTAATCCTAATCTATCTATCCAAC
UFO08835.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| WRNexo-RA | 1495 | CG7670-RA | 68..1133 | 9..1064 | 4835 | 97.9 | Plus |
| WRNexo-RB | 1498 | CG7670-RB | 68..1136 | 9..1064 | 4795 | 97.6 | Plus |
| WRNexo-RC | 1495 | CG7670-RC | 68..1133 | 9..1064 | 4740 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18365121..18365345 | 670..446 | 1125 | 100 | Minus |
| 3R | 32079331 | 3R | 18365407..18365611 | 446..242 | 1025 | 100 | Minus |
| 3R | 32079331 | 3R | 18364822..18365065 | 910..671 | 1010 | 97.1 | Minus |
| 3R | 32079331 | 3R | 18365672..18365778 | 242..136 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 18365911..18365979 | 137..69 | 345 | 100 | Minus |
| 3R | 32079331 | 3R | 18366035..18366095 | 69..9 | 305 | 100 | Minus |
| 3R | 32079331 | 3R | 18364647..18364765 | 1025..911 | 260 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:46:04 has no hits.
UFO08835.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:13 Download gff for
UFO08835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WRNexo-RA | 82..1126 | 9..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:36:53 Download gff for
UFO08835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WRNexo-RA | 68..1112 | 9..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:46 Download gff for
UFO08835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WRNexo-RA | 68..1112 | 9..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:46 Download gff for
UFO08835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18364627..18364765 | 911..1044 | 91 | <- | Minus |
| 3R | 18364822..18365065 | 671..910 | 97 | <- | Minus |
| 3R | 18365121..18365345 | 446..670 | 100 | <- | Minus |
| 3R | 18365408..18365610 | 243..445 | 100 | <- | Minus |
| 3R | 18365672..18365776 | 138..242 | 100 | <- | Minus |
| 3R | 18365911..18365979 | 69..137 | 100 | <- | Minus |
| 3R | 18366036..18366095 | 9..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:36:53 Download gff for
UFO08835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14190349..14190487 | 911..1044 | 91 | <- | Minus |
| arm_3R | 14190544..14190787 | 671..910 | 97 | <- | Minus |
| arm_3R | 14190843..14191067 | 446..670 | 100 | <- | Minus |
| arm_3R | 14191130..14191332 | 243..445 | 100 | <- | Minus |
| arm_3R | 14191394..14191498 | 138..242 | 100 | <- | Minus |
| arm_3R | 14191633..14191701 | 69..137 | 100 | <- | Minus |
| arm_3R | 14191758..14191817 | 9..68 | 100 | | Minus |
