UFO08836.5prime Sequence
1101 bp (985 high quality bases) assembled on 2011-08-10
> UFO08836.5prime
CAGTCGACATGAAGTGGCTTGTGTTATTTGTAATAACCCTTGGCTTAGGA
TTAGCCACACCCAATTCGACCTACAATCATTATCGCCTGCCGACGGCACT
TCGACCTATCAAGTATGACCTGCACGTGCTAACCCAGCTGGAATATGCTG
ATGATTTTAGTTTTAACGGAAGTGTGAAAATCCAAATCCAAGTCTTGGAA
AACACCAACAACATAACTTTGCATTCGAAGGAACTGACGATCGATGAGAC
GGCAACCACTCTTCGCCAAATTACCGGAGAGGATCTAAAGAATAACTGCG
TGTCCTCCACAGAGACCGATTGCGGGGATACTACCGCAGCTCCTACGTGG
ATCCTGTGGCCAATGAGACCAGGTGTGGACTGGCGATTACTCGAAGAAGA
AAACAGATATTTAATCCTTGTATGTTCACCGGACTTAGCAATATGCCCGG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAG
CCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTT
GTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAGTT
GTCCATATTGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTG
GCTGAGACGAAAACATATTCTCATAAACCCTTTAGGAATAGGCCAGGTTT
TCACCGTACACGCCAATCTTGCGATATATGTTGTAGACTGCCGGAATCGT
CTTGTATTCACTCCAGAGCGATGAACGTTTCAGTTGCTCATGAATCGGTG
TACAGTTGAACACTATCCATATCACCACGCCTACGTCTTTCAATGCTACG
A
UFO08836.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31427-RF | 1127 | CG31427-RF | 101..406 | 9..314 | 1530 | 100 | Plus |
| CG31427-RE | 1076 | CG31427-RE | 101..406 | 9..314 | 1530 | 100 | Plus |
| CG31427-RD | 1152 | CG31427-RD | 71..376 | 9..314 | 1530 | 100 | Plus |
| CG31427-RF | 1127 | CG31427-RF | 505..641 | 313..449 | 685 | 100 | Plus |
| CG31427-RE | 1076 | CG31427-RE | 505..641 | 313..449 | 685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29239662..29239967 | 314..9 | 1530 | 100 | Minus |
| 3R | 32079331 | 3R | 29239427..29239563 | 449..313 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 29237857..29237998 | 280..139 | 290 | 80.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:46:09 has no hits.
UFO08836.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:14 Download gff for
UFO08836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31427-RC | 97..406 | 1..314 | 98 | -> | Plus |
| CG31427-RC | 507..647 | 315..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:37:25 Download gff for
UFO08836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31427-RD | 67..376 | 1..314 | 98 | -> | Plus |
| CG31427-RD | 477..617 | 315..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:48 Download gff for
UFO08836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31427-RD | 67..376 | 1..314 | 98 | -> | Plus |
| CG31427-RD | 477..617 | 315..455 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:48 Download gff for
UFO08836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29239662..29239971 | 1..314 | 98 | | Minus |
| 3R | 29239427..29239561 | 315..449 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:37:25 Download gff for
UFO08836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25065149..25065283 | 315..449 | 100 | <- | Minus |
| arm_3R | 25065384..25065693 | 1..314 | 98 | | Minus |
