UFO08837.5prime Sequence
1108 bp (1013 high quality bases) assembled on 2011-08-10
> UFO08837.5prime
CAGTCGACATGGCAGCTAGCAAATTCCATTGCGGCAAGCAATTGACAGCC
ACACATTCACATTTCGATGCGACATGTGCGAAAATCAGGGCCTTTTACTT
TGACCTGGACAACACGTTGATTCCCACCAGAGCCGGCGATTCCAAGGCGA
TCAGAAAGCTCGCTGATTTTCTGGAGACCCAATACCAGTTCAGCAAAGAT
GACGCAACACAGGCCACCCAAAACTTTCTAAAGGCCTTCCGCCGCTGTCC
CGATAACTCGCAAACATCGCTGGACTCGTGGCGCACTCACCTGTGGCGCG
AATCCCTTCCAGCGCGCCACAAGCACCTGGCGGAACAGATCTATCCCAAG
TGGCTGAAGTTGCGGTATCGCTACCTAGCCGTTCCGGCGGACTATGTCCA
GCTGCTGCTGCGGATGCGCCAGGCAGGCTATGCCCTGGCCCTCATCACCA
ACGGACCGTCGAACGCTCAGTGGGAGAAGGTGGCTGAGCTGAATGTGCGC
GGCTACTTTGACTGCGTGCTGGTCTCATCGGATCTGCCATGGGAGAAACC
GCATCCGGAGATCTTCTATGCCGCCTGCAACTTTCTCAATGTCAAGCCGC
AGGAGTGCGTCATGATCGGCGACAAACTGGAGACCGACATCAAGGGCGGT
CACTTGGCCCAGCTGGGTCTCACATTCTGGACGCCACTAAGCAATAGCAG
CGCGGCGGCACAATCGCTAGAGGATGTGGAGTACAAGCCGCACGTCAAGC
TGGGCAGCCTGCTGGAGATGTACAAGTACTTTCCGCGCCTCAACTCAGTC
GCTCTGCCCGAGATGCCGTCGGTTTCCAGAAGACGTGGCAGCCACATGAG
TCCCATTAGCCAGGGCTCCGGCAGCGGAGCAGCTCCAGCGCCATTTGTGT
GCCGGGTGCTGGCCATGGATACCATCACCACCACCACCAGCAGCACAGAG
CAGCAGCAGCAGCATCATCATCATCATCATCAGAGCAGTGCTTTATCGAC
GAGGCGTTTCACTGCCCCCATGGATGCTCATAGCGGAGGGCGGGAGAACA
GCTGCACAGTTCTGGCCAGCTTTTCTAGACCATTTCGTTGGCGCGCGGAC
CCAGTAAG
UFO08837.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15771-RD | 2464 | CG15771-RD | 481..1541 | 8..1061 | 5005 | 98.8 | Plus |
| CG15771-RA | 2290 | CG15771-RA | 307..1367 | 8..1061 | 5005 | 98.8 | Plus |
| CG15771-RC | 2292 | CG15771-RC | 456..1369 | 155..1061 | 4270 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5757860..5758348 | 157..645 | 2445 | 100 | Plus |
| X | 23542271 | X | 5758403..5758782 | 643..1017 | 1670 | 98.4 | Plus |
| X | 23542271 | X | 5756054..5756204 | 8..158 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:46:40 has no hits.
UFO08837.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:18 Download gff for
UFO08837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15771-RA | 410..1477 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:40:52 Download gff for
UFO08837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15771-RA | 300..1367 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:58 Download gff for
UFO08837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15771-RA | 300..1367 | 1..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:58 Download gff for
UFO08837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5756047..5756204 | 1..158 | 97 | -> | Plus |
| X | 5757862..5758347 | 159..644 | 100 | -> | Plus |
| X | 5758405..5758828 | 645..1061 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:40:52 Download gff for
UFO08837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5650080..5650237 | 1..158 | 97 | -> | Plus |
| arm_X | 5651895..5652380 | 159..644 | 100 | -> | Plus |
| arm_X | 5652438..5652861 | 645..1061 | 96 | | Plus |
