Clone UFO08838 Report

Search the DGRC for UFO08838

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:88
Well:38
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG11009-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO08838.5prime Sequence

1128 bp (1014 high quality bases) assembled on 2011-08-10

> UFO08838.5prime
CAGTCGACATGTCGGTTAATACGGCTCACGCCAACAATGGCGTGCTCATC
CATGCTGGAGAGTACATACTGCTCCACAGCGACAGTGTCTCCATGGAGTT
CTCCGGTCAGGACAATCCCATCTTCAAGGGCTCCAAAGGTGGCAGGATTT
ATCTCACCTCCCACCGAATGATCTTCAATAGCAAGAAGTCCTCGGATTCG
ATGCAGTCGTTCAGTGCCCCGTTTGTTGCTCTTTCGGATGTGGAAATCGA
ACAGCCCGTTTTCGGGGCCAACTACATCAAGGGAAAGGTTCGCGCTCAGC
CAAATGGAAACTACGTGGGCGAGGTCAAGTTCAAGCTCCATTTCAAGGCA
GGCGGCGCAATTGAATACGGTCAAGCTCTACTGCGCTCCGCCAAGACGGC
GATGAACAACTACCACCGCGGTGGTCTGGCTGGTGATGATCCGCCACCAT
ATCAGCCGGCTGGATCCTGGAATGAGGCACCACCACCGGCATATCAGCCA
CCACCTGGCTACTATGGCTGGCTGCCGCAACATGACGCCTTCAGCGGCCC
TGCGCCGAATACGGTCTATATGAGCGACAATCCGCCGCCGTATCCGGGTA
TCGCACCACCTGCTCACCAACCAGCACCGCAACAGCCGCAGGCACCGTCG
TCGAATGAACCCAATTGGTATGGTTTTTCAGCGCCGCCGCCGCAGCAGCA
ACAACAGCAGCCGGGCTATGGGCCACAAGGATGGGCCGGTGGCTATGTCC
AACCTCCGCCGTACGCTTCATGTGCGCCAAATTGTCCACCACAGCCGCCG
TACGCCGCTCCGGCTCAGACGTACAATGGCCCACAGCCATATGGTGGATA
CGGCAATGTTCCTGGCGGATTTAATACCCCCGGATTTCAGCAACGAATGT
AAATCCAAATGGCCTATCAGTTGACCACCACCACCCGGACAACAGCAGCA
GAGCAGCTGGAGGAGCCGCCGCATCTGGAGCCAGCCTTATGGGCTTCAGC
TGCCCCTTGAAATGGCCAGCTTTCTAGAACAATCCGTTGCCCGCGGGCCA
GGTAAGTGTCATAATCTAATCTATCTATCATATCCACTAGCCTAGAAATC
TGGTCCAGTACATTGCCTGATCTCCACA

UFO08838.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
Wbp2-RC 1751 CG11009-RC 109..1122 6..1014 4720 98.1 Plus
Wbp2-RB 1758 CG11009-RB 109..1122 6..1014 4720 98.1 Plus
Wbp2-RG 1369 CG11009-RG 109..1114 6..1006 4710 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12851308..12851710 603..1001 1665 96.5 Plus
3L 28110227 3L 12850498..12850797 65..364 1500 100 Plus
3L 28110227 3L 12850915..12851153 365..603 1135 98.3 Plus
3L 28110227 3L 12850273..12850331 6..64 295 100 Plus
Blast to na_te.dros performed 2014-11-26 23:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 136..192 678..731 116 72.4 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9166..9222 678..731 116 72.4 Plus
roo 9092 roo DM_ROO 9092bp 1031..1090 653..713 113 67.2 Plus

UFO08838.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:19 Download gff for UFO08838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11009-RC 110..1127 1..1014 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:41:21 Download gff for UFO08838.5prime
Subject Subject Range Query Range Percent Splice Strand
Wbp2-RB 110..1127 1..1014 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:01 Download gff for UFO08838.5prime
Subject Subject Range Query Range Percent Splice Strand
Wbp2-RB 105..1122 1..1014 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:01 Download gff for UFO08838.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12850269..12850331 1..64 95 -> Plus
3L 12850498..12850797 65..364 100 -> Plus
3L 12850915..12851153 365..603 98 -> Plus
3L 12851309..12851710 604..1001 97 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:41:21 Download gff for UFO08838.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12843369..12843431 1..64 95 -> Plus
arm_3L 12843598..12843897 65..364 100 -> Plus
arm_3L 12844015..12844253 365..603 98 -> Plus
arm_3L 12844409..12844810 604..1001 97 == Plus