UFO08838.5prime Sequence
1128 bp (1014 high quality bases) assembled on 2011-08-10
> UFO08838.5prime
CAGTCGACATGTCGGTTAATACGGCTCACGCCAACAATGGCGTGCTCATC
CATGCTGGAGAGTACATACTGCTCCACAGCGACAGTGTCTCCATGGAGTT
CTCCGGTCAGGACAATCCCATCTTCAAGGGCTCCAAAGGTGGCAGGATTT
ATCTCACCTCCCACCGAATGATCTTCAATAGCAAGAAGTCCTCGGATTCG
ATGCAGTCGTTCAGTGCCCCGTTTGTTGCTCTTTCGGATGTGGAAATCGA
ACAGCCCGTTTTCGGGGCCAACTACATCAAGGGAAAGGTTCGCGCTCAGC
CAAATGGAAACTACGTGGGCGAGGTCAAGTTCAAGCTCCATTTCAAGGCA
GGCGGCGCAATTGAATACGGTCAAGCTCTACTGCGCTCCGCCAAGACGGC
GATGAACAACTACCACCGCGGTGGTCTGGCTGGTGATGATCCGCCACCAT
ATCAGCCGGCTGGATCCTGGAATGAGGCACCACCACCGGCATATCAGCCA
CCACCTGGCTACTATGGCTGGCTGCCGCAACATGACGCCTTCAGCGGCCC
TGCGCCGAATACGGTCTATATGAGCGACAATCCGCCGCCGTATCCGGGTA
TCGCACCACCTGCTCACCAACCAGCACCGCAACAGCCGCAGGCACCGTCG
TCGAATGAACCCAATTGGTATGGTTTTTCAGCGCCGCCGCCGCAGCAGCA
ACAACAGCAGCCGGGCTATGGGCCACAAGGATGGGCCGGTGGCTATGTCC
AACCTCCGCCGTACGCTTCATGTGCGCCAAATTGTCCACCACAGCCGCCG
TACGCCGCTCCGGCTCAGACGTACAATGGCCCACAGCCATATGGTGGATA
CGGCAATGTTCCTGGCGGATTTAATACCCCCGGATTTCAGCAACGAATGT
AAATCCAAATGGCCTATCAGTTGACCACCACCACCCGGACAACAGCAGCA
GAGCAGCTGGAGGAGCCGCCGCATCTGGAGCCAGCCTTATGGGCTTCAGC
TGCCCCTTGAAATGGCCAGCTTTCTAGAACAATCCGTTGCCCGCGGGCCA
GGTAAGTGTCATAATCTAATCTATCTATCATATCCACTAGCCTAGAAATC
TGGTCCAGTACATTGCCTGATCTCCACA
UFO08838.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Wbp2-RC | 1751 | CG11009-RC | 109..1122 | 6..1014 | 4720 | 98.1 | Plus |
Wbp2-RB | 1758 | CG11009-RB | 109..1122 | 6..1014 | 4720 | 98.1 | Plus |
Wbp2-RG | 1369 | CG11009-RG | 109..1114 | 6..1006 | 4710 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12851308..12851710 | 603..1001 | 1665 | 96.5 | Plus |
3L | 28110227 | 3L | 12850498..12850797 | 65..364 | 1500 | 100 | Plus |
3L | 28110227 | 3L | 12850915..12851153 | 365..603 | 1135 | 98.3 | Plus |
3L | 28110227 | 3L | 12850273..12850331 | 6..64 | 295 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 136..192 | 678..731 | 116 | 72.4 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9166..9222 | 678..731 | 116 | 72.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1031..1090 | 653..713 | 113 | 67.2 | Plus |
UFO08838.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:19 Download gff for
UFO08838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11009-RC | 110..1127 | 1..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:41:21 Download gff for
UFO08838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wbp2-RB | 110..1127 | 1..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:01 Download gff for
UFO08838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wbp2-RB | 105..1122 | 1..1014 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:01 Download gff for
UFO08838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12850269..12850331 | 1..64 | 95 | -> | Plus |
3L | 12850498..12850797 | 65..364 | 100 | -> | Plus |
3L | 12850915..12851153 | 365..603 | 98 | -> | Plus |
3L | 12851309..12851710 | 604..1001 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:41:21 Download gff for
UFO08838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12843369..12843431 | 1..64 | 95 | -> | Plus |
arm_3L | 12843598..12843897 | 65..364 | 100 | -> | Plus |
arm_3L | 12844015..12844253 | 365..603 | 98 | -> | Plus |
arm_3L | 12844409..12844810 | 604..1001 | 97 | == | Plus |