UFO08839.5prime Sequence
1090 bp (979 high quality bases) assembled on 2011-08-10
> UFO08839.5prime
CAGTCGACATGCCGGCCATCCGACCACTGAGTCCCGAGCTCCAAAAGACT
GCGATTGAGAACCTGAATGAGGTGCCTAATAAGTTGGATGACGACATCGC
CGCCCTGAGGGATTGGATTAAGCAGCAACCCCATTTGAAAGCCCGCACAG
ATGACCAGTTCTTGGTGAACTTCCTGCGCGGCTGCAAGTTCAGTTTGGAA
AGGACCAAGTCGAAGATCGACAGGTTCTACACACTACGCACCAAGTACCC
AGAGTTTTATTTGGGTCATAATGTCGATGTGGACAAAGCACTGGAGATAT
TCCGATTGGGCACCATAGTTATTCTGCCACGTCCTCTAAACGATAATGGC
CCGCGATTGGCTCTGCTGCGCATGGCCTGCTATGATCCCAGCAAATACAC
CCTCCAGGAGGTGAATCGAGCTGCTGGTCTCATGCAGCAGATTATGCTCG
ACGAGGACGATGTGGCCATTGTGAATGGTTTAATATCCATTCTGGATCTG
TCCAATGTCACCACCGGGCACTTCCTGCAGATGTCACCGTCCTTCGCCAA
GAAGATGACCGTTTTTCAGGAGGAGGCCCTGCCCCTGCGACCGCAGGGAA
TCCATTTCATTAATACGCCCAACGGATTTGACACCATCTTCAATATGATC
AAGCCCATGATGTCTAAGAAGCAGCAAGGACGCCTCTACGTTCATGGAAG
CAAATGGGAGGCACTCTACAATCAGATTCCCAAACAGTATTTGCCAGTGG
AATACGGAGGGGAGAACGGATCGATTCCGGAGCTGCTGCAGCAGTGGGAG
CAGCGTATTCTAGCCTACCGGAATTACTGGGAGGAGGAGAAGACTACGGA
ACCGATGAAGCCTCCGAGTGGGTCAGCCTGTTGACTTCGAGAGTCTTTTT
GGTCTGCAGGGCTCCTTCGGCATTGATGTGACGCAAGCTTTCTAGACCAT
CGTTGGCGGGGCGGGCCCAGGTAGTGTCATAATCATATTCATATCATAAT
CATAATCCAACTAGGCCTAGGAGATCTGTCATGACTATGGCTTGGATTCA
CAATAAAACGCCGGCGCACGAAGGTCTGGACCATTCGATG
UFO08839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33966-RA | 1163 | CG33966-RA | 44..955 | 9..918 | 4510 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1234539..1234912 | 310..683 | 1870 | 100 | Plus |
| 3L | 28110227 | 3L | 1234173..1234474 | 9..310 | 1510 | 100 | Plus |
| 3L | 28110227 | 3L | 1234976..1235212 | 684..918 | 1085 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:46:49 has no hits.
UFO08839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:19 Download gff for
UFO08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33966-RA | 36..962 | 9..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:41:50 Download gff for
UFO08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33966-RA | 44..970 | 9..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:02 Download gff for
UFO08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33966-RA | 44..970 | 9..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:02 Download gff for
UFO08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1234540..1234912 | 311..683 | 100 | -> | Plus |
| 3L | 1234976..1235227 | 684..930 | 98 | | Plus |
| 3L | 1234173..1234474 | 9..310 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:41:50 Download gff for
UFO08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1234173..1234474 | 9..310 | 100 | -> | Plus |
| arm_3L | 1234976..1235227 | 684..930 | 98 | | Plus |
| arm_3L | 1234540..1234912 | 311..683 | 100 | -> | Plus |
