UFO08903.5prime Sequence
1105 bp (1023 high quality bases) assembled on 2011-08-10
> UFO08903.5prime
CAGTCGACATGGTGGGTAGCCTGCGGAAGATCAAGCTCGAGCTAGGAGGC
GACAACCTGCAGTTGGCCATCTGCAAGGCGGGCTCCATATCCTATCTGAA
GCGATTCAACAAGAAGAGCGAGCCCACGTGGATGTTTGTCACGAGCGGCA
AGGCCATCAATATCATGTTCGGCACGGATGTGCCCAAGCTGGTGGCCATG
ATCACCCGAATGCTGCAGTCGACGATGGCCAAGGAAACGCACCTGAGCTA
CGAGATCACCGAGCTCCAGCCGATCGAGCTGGAGCAGCTGGAGGTGCGCA
ACAAGGCGCTGCGCCTGGCCGAGGAGATCGAGCTGGCGGAGAGCCGTCGG
AAGCGGCTGGAGTACCTTCACAGCGTCACCGACTGCATCATGGCCAACCT
GCCGGACATCGGGATCACGGTCTTCGGGCCACAGGTTAATCGCGACATGT
TCAAGAAACTCTCGGAGCCGGCTGATCCGCTCAAGATTCAGTGCAAGGAC
CGCAAGGTATTTACCATTCTGCCTAGCGACATCGCCACCGTCAACTTTGC
TGCGGAGAATCCACTGTCACCGGAGGTTATCGAGCAGCTCTACGACAAGG
AGCTGCTGATGTGCTTCTGGAAGGTGGACGAGGTGCTCGGCACGCCACCG
ACCGTGCTCCGCCAATATGCCCACGAGCTGACCAAGGAGACCATTAAGCC
GCCGGACGAGTTCAACGAGGAGGAGATCACCGTGCCGCCCATGATTGTGC
CGCTGGAGGTGACCGTGGAGATATCTGATCCAGAGCCATCAACGGAGAAT
AGTCAGGTGCAGCCGGACGCAGTGCATCTGGCCGAGATTAGGAGCGAAAA
TGTAGCGGAGCTGAGGAAGAGACGGAGACAGAGGCGGAGGCAGTGCGGCA
CCAGAGGCCAAACTGCTCCGGTTGCAGCTAAGAGAACCAGACTATTCGGA
TACCGCCGATTTGGGTGCCCAGTGACAGCGCACCCATGCAGCGCTTATTC
TACACGTACTTCGGTGCCCAGAACACGACTTTCTTCCGCCGGATCTGTGC
GGGCACCGCCAATCGTGATGATTCTTCCACGCCTACAGAAGAAGATCTCT
AATCT
UFO08903.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14221-RC | 1998 | CG14221-RC | 255..1360 | 4..1099 | 5060 | 97.8 | Plus |
| CG14221-RB | 1941 | CG14221-RB | 198..1303 | 4..1099 | 5060 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19619994..19620634 | 783..143 | 3205 | 100 | Minus |
| X | 23542271 | X | 19619659..19619927 | 1045..782 | 940 | 95.9 | Minus |
| X | 23542271 | X | 19620712..19620783 | 143..72 | 360 | 100 | Minus |
| X | 23542271 | X | 19620854..19620921 | 71..4 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:54:20 has no hits.
UFO08903.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:24 Download gff for
UFO08903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14221-RB | 196..1262 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:19 Download gff for
UFO08903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14221-RB | 196..1262 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:00 Download gff for
UFO08903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14221-RB | 196..1262 | 1..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:00 Download gff for
UFO08903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19620712..19620783 | 72..143 | 100 | <- | Minus |
| X | 19620854..19620922 | 1..71 | 95 | | Minus |
| X | 19619641..19619925 | 784..1059 | 94 | <- | Minus |
| X | 19619994..19620633 | 144..783 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:19 Download gff for
UFO08903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19513674..19513958 | 784..1059 | 94 | <- | Minus |
| arm_X | 19514027..19514666 | 144..783 | 100 | <- | Minus |
| arm_X | 19514745..19514816 | 72..143 | 100 | <- | Minus |
| arm_X | 19514887..19514955 | 1..71 | 95 | | Minus |
